BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZA06RM1.SCF screened BAC_end
(1018 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig869 1392 0.0
3x_Contig1503 222 1e-57
3x_Contig1263 222 1e-57
3x_Contig1624 206 6e-53
3x_Contig1722 204 3e-52
>3x_Contig869
Length = 2873
Score = 1392 bits (702), Expect = 0.0
Identities = 788/809 (97%), Gaps = 6/809 (0%)
Strand = Plus / Plus
Query: 42 cttcctctcggtagccaagttggtttaaggcgccagactgtaatttgaaaacacaaagca 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1859 cttcctctcggtagccaagttggtttaaggcgccagactgtaatttgaaaacacaaagca 1918
Query: 102 atttgtaatctggagatcgggcgttcgactcgcccccgggagacttatctttttttttcg 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1919 atttgtaatctggagatcgggcgttcgactcgcccccgggagacttatctttttttttcg 1978
Query: 162 ttttcatcttcccatttcttttagttcccacgtcatcaccatctaataatagcaagagca 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1979 ttttcatcttcccatttcttttagttcccacgtcatcaccatctaataatagcaagagca 2038
Query: 222 tatcttatccattatactactactgcctctactctcacattacatcttcccagggcatca 281
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2039 aagcttatccattatactactactgcctctactctcacattacatcttcccagggcatca 2098
Query: 282 gtttcaacggcaacgggtcatgggacttgctgtccattgggacagcaagttccgcagcac 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2099 gtttcaacggcaacgggtcatgggacttgctgtccattgggacagcaagttccgcagcac 2158
Query: 342 atgcgatctttgcgaacaaagatgtcactgatgcatcatctggcactctcagtaggaact 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2159 atgcgatctttgcgaacaaagatgtcactgatgcatcatctggcactctcagtaggaact 2218
Query: 402 gctccctctcgcatcttattctaagacatctcgacatgtctgtgttaagaccgatgcgac 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2219 gctccctctcgcatcttattctaagacatctcgacatgtctgtgttaagaccgatgcgac 2278
Query: 462 aatcttgtaacgaatacttcttgatgggatcccggttccattgtatcaagtttaacgatt 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2279 aatcttgtaacgaatacttcttgatgggatcccggttccattgtatcaagtttaacgatt 2338
Query: 522 tgtccttttctaaatataacccttttgccgtacatagtactatatggtctctttggttcg 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2339 tgtccttttctaaatataacccttttgccgtacatagtactatatggtctctttggttcg 2398
Query: 582 gaacttgggtagattgaaccaattgatcgtgacagagttgatggtttgaagtagctttgt 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2399 gaacttgggtagattgaaccaattgatcgtgacagagttgatggtttgaagtagctttgt 2458
Query: 642 actggttgtattcc-attcgtccagtttagagtaccatttgtttatgagttttt-atcat 699
|||| ||||||||| |||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 2459 actgtttgtattccaattcgtccagtttagagtaccatttgttaatgagtttttcatcat 2518
Query: 700 gagaatggattcaaagtcgaatt-acagttgggtagagttgatttcgac-cagtgtggag 757
|||||||||| || |||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 2519 gagaatggatcaaaggtcgaattaacagttgggtagagttgatttcgacacagtgtggag 2578
Query: 758 tccagcggtgggagtgttc-cattgtgtttgcagtaagaaagagatctgcaactaagggg 816
||||||||||||||||||| ||||||||||||||| ||| |||||||| ||| ||||||
Sbjct: 2579 tccagcggtgggagtgttcgaattgtgtttgcagtaggaaggagatctgaaacgaagggg 2638
Query: 817 tgtaaggtgggcagcggctccatggntgg 845
|||| ||| |||||||| ||||||| |||
Sbjct: 2639 tgtagggt-ggcagcggttccatggttgg 2666
>3x_Contig1503
Length = 10719
Score = 222 bits (112), Expect = 1e-57
Identities = 115/116 (99%)
Strand = Plus / Minus
Query: 44 tcctctcggtagccaagttggtttaaggcgccagactgtaatttgaaaacacaaagcaat 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3592 tcctctcggtagccaagttggtttaaggcgccagactgtaatttgaaaacacaaagcaat 3533
Query: 104 ttgtaatctggagatcgggcgttcgactcgcccccgggagacttatcttttttttt 159
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3532 ttgtaatctggagatcgggcgttcgactcgcccccgggagacttattttttttttt 3477
>3x_Contig1263
Length = 6840
Score = 222 bits (112), Expect = 1e-57
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 46 ctctcggtagccaagttggtttaaggcgccagactgtaatttgaaaacacaaagcaattt 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5478 ctctcggtagccaagttggtttaaggcgccagactgtaatttgaaaacacaaagcaattt 5537
Query: 106 gtaatctggagatcgggcgttcgactcgcccccgggagacttatcttttttt 157
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5538 gtaatctggagatcgggcgttcgactcgcccccgggagacttatcttttttt 5589
>3x_Contig1624
Length = 12551
Score = 206 bits (104), Expect = 6e-53
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 44 tcctctcggtagccaagttggtttaaggcgccagactgtaatttgaaaacacaaagcaat 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6094 tcctctcggtagccaagttggtttaaggcgccagactgtaatttgaaaacacaaagcaat 6035
Query: 104 ttgtaatctggagatcgggcgttcgactcgcccccgggagactt 147
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6034 ttgtaatctggagatcgggcgttcgactcgcccccgggagactt 5991
>3x_Contig1722
Length = 17718
Score = 204 bits (103), Expect = 3e-52
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 45 cctctcggtagccaagttggtttaaggcgccagactgtaatttgaaaacacaaagcaatt 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5777 cctctcggtagccaagttggtttaaggcgccagactgtaatttgaaaacacaaagcaatt 5718
Query: 105 tgtaatctggagatcgggcgttcgactcgcccccgggagactt 147
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5717 tgtaatctggagatcgggcgttcgactcgcccccgggagactt 5675
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6885
Number of Sequences: 1807
Number of extensions: 6885
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 5
length of query: 1018
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1002
effective length of database: 10,329,639
effective search space: 10350298278
effective search space used: 10350298278
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)