BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZA07RM1.SCF screened BAC_end
(1033 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1637 1215 0.0
>3x_Contig1637
Length = 14855
Score = 1215 bits (613), Expect = 0.0
Identities = 681/701 (97%), Gaps = 2/701 (0%)
Strand = Plus / Minus
Query: 43 ttgtagcgattttttttctggcactgggagcagtgaatgcgctttctgttcatggcttga 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10587 ttgtagcgattttttttctggcactgggagcagtgaatgcgctttctgttcatggcttga 10528
Query: 103 agacacttgttatttatgataatagagtcactgatttggataattacagcaaattcctag 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10527 agacacttgttatttatgataatagagtcactgatttggataattacagcaaattcctag 10468
Query: 163 attcattgaagcaacgttcatatgatattcaattagcttctgtgaatgaagatgctgttt 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10467 attcattgaagcaacgttcatatgatattcaattagcttctgtgaatgaagatgctgaag 10408
Query: 223 ttctttccttatacaataatgatgaaaggttgtatgataatttgattatattcccattga 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10407 ttctttccttatacaataatgatgaaaggttgtatgataatttgattatattcccattga 10348
Query: 283 aaaccagacaaatctcaaagcagatttccacctcgaagttagttcaatttcacaccgaag 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10347 aaaccagacaaatctcaaagcagatttccacctcgaagttagttcaatttcacaccgaag 10288
Query: 343 gtggtgatattatggctatcacgtcccctgagggtcttgtcgatccagtcagactatttt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10287 gtggtgatattatggctatcacgtcccctgagggtcttgtcgatccagtcagactatttt 10228
Query: 403 tgaacgaattgggtatctatccaagccctaagaatttcctgctcaagaatttcaatgaaa 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10227 tgaacgaattgggtatctatccaagccctaagaatttcctgctcaagaatttcaatgaaa 10168
Query: 463 acggcccatctggttcccacgaaatttccacctcaaatatcttaaacagatacgtctatg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10167 acggcccatctggttcccacgaaatttccacctcaaatatcttaaacagatacgtctatg 10108
Query: 523 atggctctagagaatttgaactaaactatgaaggttcagcagctttgttagataacggtg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10107 atggctctagagaatttgaactaaactatgaaggttcagcagctttgttagataacggtg 10048
Query: 583 agtacattgtggagattttgagggctccaagagaattcgtttgcaaagattttcactaca 642
|||||||||||||||||||||||||||||||||||| ||||||||||||| | || |||
Sbjct: 10047 agtacattgtggagattttgagggctccaagagaatccgtttgcaaagatatcaacaaca 9988
Query: 643 aggaagaggactggtcagttggtttttcaaggtcatttgattggcggcttttaaacgttg 702
|||||||||||||||||||||| || ||||||||||||||||| |||||| ||||||||
Sbjct: 9987 aggaagaggactggtcagttgg-ttctcaaggtcatttgattgcgggctttcaaacgttg 9929
Query: 703 atca-ttcccgtcctacttgtattggaagctcgcatttctt 742
| || ||||| ||||||| |||||||||||||| |||||
Sbjct: 9928 aacagcgcccgtactacttggattggaagctcgcagttctt 9888
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8110
Number of Sequences: 1807
Number of extensions: 8110
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 1033
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1017
effective length of database: 10,329,639
effective search space: 10505242863
effective search space used: 10505242863
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)