BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC1ZA08FM1.SCF screened BAC_end (1035 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1270 444 e-124 >3x_Contig1270 Length = 7505 Score = 444 bits (224), Expect = e-124 Identities = 246/252 (97%), Gaps = 1/252 (0%) Strand = Plus / Minus Query: 84 tactgggcagtgaaggataatgaggaacgtcttattgcagcagcaagtaaggatttccat 143 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 252 tactgggcagtgaaggataatgaggaacgtcttattgcagcagcaagtaaggatttccat 193 Query: 144 agggcaagaagtgaaacgcttactattgaattattccccttgtacaacaatatcctttat 203 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 192 agggcaagaagtgaaacgcttactattgaattagtccccttgtacaacaatatcctttat 133 Query: 204 ttgattaaaaacatgaagattga-ttctaaccaaagaagattaaggttagtttacttgca 262 ||||||||||||||||||| || || |||||||||||||||||||||||||||||||| Sbjct: 132 ttgattaaaaacatgaagaaagagatcgaaccaaagaagattaaggttagtttacttgca 73 Query: 263 cattggttcggtacgactttcgtggaaaagatcgcattggggaccgttcttgtcatttct 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 72 cattggttcggtacgactttcgtggaaaagatcgcattggggaccgttcttgtcatttct 13 Query: 323 ccgtttaatttc 334 |||||||||||| Sbjct: 12 ccgtttaatttc 1 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6877 Number of Sequences: 1807 Number of extensions: 6877 Number of successful extensions: 36 Number of sequences better than 1.0e-20: 1 length of query: 1035 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1019 effective length of database: 10,329,639 effective search space: 10525902141 effective search space used: 10525902141 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)