BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZA08RM1.SCF screened BAC_end
(994 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1612 1009 0.0
>3x_Contig1612
Length = 15608
Score = 1009 bits (509), Expect = 0.0
Identities = 535/540 (99%), Gaps = 3/540 (0%)
Strand = Plus / Plus
Query: 34 aagcttaatattaaaca-taccgtctctcgttaccacgagcatgtacatcttccagctta 92
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15070 aagcttaatattaaacaataccgtctctcgttaccacgagcatgtacatcttccagctta 15129
Query: 93 aagccaaccgctaaattgaggcctctgtgttcatcacaaaacatgaacggcgaaccatca 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15130 aagccaaccgctaaattgaggcctctgtgttcatcacaaaacatgaacggcgaaccatca 15189
Query: 153 taactcattgtctcttctgagaacgttttcttgataatcatactgagcaattggtacctt 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15190 taactcattgtctcttctgagaacgttttcttgataatcatactgagcaattggtacctt 15249
Query: 213 atcgaggagtactgcgtcgatacgctatagaaatcgtcaatacttgatctgatagacgtt 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15250 atcgaggagtactgcgtcgatacgctatagaaatcgtcaatacttgatctgatagacgtt 15309
Query: 273 gcatctgattttggttctggaagtctcaacaaacatgagtcacagtacg-aatcctttgg 331
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 15310 gcatctgattttggttctggaagtctcaacaaacatgagtcacagtacgaaatcctttgg 15369
Query: 332 atactctggtaacaatagttcattacacctatccagatcagaagctatttgcgtaaccat 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15370 atactctggtaacaatagttcattacacctatccagatcagaagctatttgcgtaaccat 15429
Query: 392 tagaaccttcggaccatgcttatcacaaaaatgggtcaaagaaagaaacccaacatcatc 451
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15430 tagaaacttcggaccatgcttatcacaaaaatgggtcaaagaaagaaacccaacatcatc 15489
Query: 452 gacactcatactagtagcttgtacttggtccgtgcttcttttcttccttctttctttcct 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15490 gacactcatactagtagcttgtacttggtccgtgcttcttttcttccttctttctttcct 15549
Query: 512 ccgttcaaagtcaatcgaaaagactttatcgctttgagaataaagggaaaaaccanacga 571
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 15550 ccgttcaaagtcaatcgaaaagactttatcgctttgagaataaa-ggaaaaaccaaacga 15608
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8096
Number of Sequences: 1807
Number of extensions: 8096
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 994
length of database: 10,358,551
effective HSP length: 16
effective length of query: 978
effective length of database: 10,329,639
effective search space: 10102386942
effective search space used: 10102386942
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)