BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZA09FM1.SCF screened BAC_end
(1004 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1565 1174 0.0
>3x_Contig1565
Length = 10922
Score = 1174 bits (592), Expect = 0.0
Identities = 735/763 (96%), Gaps = 15/763 (1%)
Strand = Plus / Plus
Query: 87 acttattttgcttgcctttttcgagctactgtttcctaaatgcgcattgtatatacatca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5664 acttattttgcttgcctttttcgagctactgtttcctaaatgcgcattgtatatacatca 5723
Query: 147 gagatgaccgccttttttctttttgcaatacaccgggaaaaagcctcagtcgacactgaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5724 gagatgaccgccttttttctttttgcaatacaccgggaaaaagcctcagtcgacactgaa 5783
Query: 207 atcgtacagcatacgtggtccttttggtgatactcctttaggctttgtcttttaggtccg 266
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5784 atcgtacagcatacgtggtccaaagggtgatactcctttaggctttgtcttttaggtccg 5843
Query: 267 ctgattactatcattcgaggaaaatagtatatacgttcccggaatgattttctcagccgg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5844 ctgattactatcattcgaggaaaatagtatatacgttcccggaatgattttctcagccgg 5903
Query: 327 cattccgataaaagtcagaatagataggagggaggagaagcagctagagatagaagtaaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5904 cattccgataaaagtcagaatagataggagggaggagaagcagctagagatagaagtaaa 5963
Query: 387 tgtaggggaaggaagaaacgagttagtgcaaaatcaaagcgctgcaaactctcaacgcgc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5964 tgtaggggaaggaagaaacgagttagtgcaaaatcaaagcgctgcaaactctcaacgcgc 6023
Query: 447 cacttctgctttaagaagaagcagaagaaagtatacgaaaggcggaaaatcagctcgttt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6024 cacttctgctttaagaagaagcagaagaaagtatacgaaaggcggaaaatcagctcgttt 6083
Query: 507 ccaggcttcctgtaagcttcattgataagcttctgtccattaaatctactggaataaaac 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6084 ccaggcttcctgtaagcttcattgataagcttctgtccattaaatctactggaataaaac 6143
Query: 567 gctcagtttcagttggaaag-aaaaaaaaagacatattccgaccaatgagagcggttcag 625
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 6144 gctcagtttcagttggaaagaaaaaaaaaagacatattccgaccaatgagagcggttcag 6203
Query: 626 ataattttgaagaagcgtaatattgagagggacaacatactttttaccaaccccattctt 685
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 6204 ataattttgaagaagcgtaatattgagagggacaacaaactttttaccaacccatttctt 6263
Query: 686 ggtgngatctttccttacctaaggggaa-tgc-aaaagaaaaaaaag-accgtcttcaaa 742
| || ||||||||||||||||| || || ||| |||||||||||||| ||||||||| ||
Sbjct: 6264 gttgtgatctttccttacctaaaggaaattgcaaaaagaaaaaaaagaaccgtcttcgaa 6323
Query: 743 tt-catt-cgggcgatgagcaagt-gtattt-ggaggt-acgtatcga-tagtag-ttat 795
|| |||| ||| |||||||||||| |||||| |||||| ||||||||| |||||| ||||
Sbjct: 6324 ttccattccggccgatgagcaagtggtatttgggaggtaacgtatcgactagtagtttat 6383
Query: 796 gcgg-tttcctactc-atccttta-aagca-cgctagaaggca 834
|||| |||||||||| |||||||| ||||| ||||||||||||
Sbjct: 6384 gcggttttcctactcaatcctttagaagcagcgctagaaggca 6426
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8434
Number of Sequences: 1807
Number of extensions: 8434
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 1004
length of database: 10,358,551
effective HSP length: 16
effective length of query: 988
effective length of database: 10,329,639
effective search space: 10205683332
effective search space used: 10205683332
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)