BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZA09RM1.SCF screened BAC_end
(1004 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1320 0.0
>3x_Contig1771
Length = 25932
Score = 1320 bits (666), Expect = 0.0
Identities = 712/725 (98%), Gaps = 2/725 (0%)
Strand = Plus / Plus
Query: 48 tagcgtcgtatttacaacagaaaacatggcctgtagcgatagcgcaaactacaattggct 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14519 tagcgtcgtatttacaacagaaaacatggcctgtagcgatagcgcaaactacaattggct 14578
Query: 108 gctcaggatggcatgcaacgtgaattaacggctcatcgaatacaaactccaatattggag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14579 gctcaggatggcatgcaacgtgaattaacggctcatcgaatacaaactccaatattggag 14638
Query: 168 aacttttggaggccaacacctccaaagaagcagcgcgcttctttgccttcgtatttttac 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14639 aacttttggaggccaacacctccaaagaagcagcgcgcttctttgccttcgtatttttac 14698
Query: 228 ccatttaatatgactcacctagtgatatactgtattgagcaatagtaatcactaggtttt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14699 ccatttaatatgactcacctagtgatatactgtattgagcaatagtaatcactaggtttt 14758
Query: 288 caggctaaagaaatgatataattcgttccactccaacagtaagtcgctctcatcgctcaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14759 caggctaaagaaatgatataattcgttccactccaacagtaagtcgctctcatcgctcaa 14818
Query: 348 gtaaactctgttgtaattttttttgattttctttctattggatgaaaataaaaaccagaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14819 gtaaactctgttgtaattttttttgattttctttctattggatgaaaataaaaaccagaa 14878
Query: 408 atacatatttaaggtttgtcaacaatggaaggcgagatgggatctgtgcgttgaggagat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14879 atacatatttaaggtttgtcaacaatggaaggcgagatgggatctgtgcgttgaggagat 14938
Query: 468 gttctggcgataatagattccacatgcggttgtaattctggcaattcgtcgatgatcttt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14939 gttctggcgataatagattccacatgcggttgtaattctggcaattcgtcgatgatcttt 14998
Query: 528 tcagctaacgaatcgcggagcttgttgaggccgtgtatctttgcgcgttggtactggttg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14999 tcagctaacgaatcgcggagcttgttgaggccgtgtatctttgcgcgttggtactggttg 15058
Query: 588 gaccgacggatcgcctctacaaactctcttgtgtacacattcgggttcctttccgtcttc 647
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 15059 gaccgacggatcgcctctacaaactctcttgtgtacacatcggggttcc-ttccgtcttc 15117
Query: 648 tatatactgtaaaacgtccaatggtacttaggaaattctgtagntgtgactcgggatcgt 707
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 15118 tatatactgtaaaacgtccaatggtac-taggaaattctgtagttgtgactcgggatcgt 15176
Query: 708 tagcttggtgattcaattgtttcatacgggccacattacctttgatggtgggaaccatac 767
||||||| ||||||||||||||||||||| | ||||||| || ||| ||| ||||||||
Sbjct: 15177 tagcttgttgattcaattgtttcatacggtcaacattacgttgcatgttggtaaccatac 15236
Query: 768 cttgc 772
|||||
Sbjct: 15237 cttgc 15241
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7434
Number of Sequences: 1807
Number of extensions: 7434
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 1004
length of database: 10,358,551
effective HSP length: 16
effective length of query: 988
effective length of database: 10,329,639
effective search space: 10205683332
effective search space used: 10205683332
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)