BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZA11FM1.SCF screened BAC_end
(985 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1718 1148 0.0
>3x_Contig1718
Length = 19496
Score = 1148 bits (579), Expect = 0.0
Identities = 706/744 (94%), Gaps = 5/744 (0%)
Strand = Plus / Plus
Query: 86 ctaggacaacataccgtaaaacatctaatccgaaacgtttttgacagcgcttatttgtca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9801 ctaggacaacataccgtaaaacatctaatccgaaacgtttttgacagcgcttatttgtca 9860
Query: 146 ttgagtttaagaaaatgaatctaggagatgtgggtaatcgcagaacattactttcttca- 204
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9861 ttgagtttaagaaaatgaatctaggagatgtgggtaatcgcagaacattactttcttcaa 9920
Query: 205 taatgctctctacttgtttt-tgtctttgatggtatccatcttcgtgaatactatttcaa 263
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 9921 taatgctctctacttgcgccatgtctttgatggtatccatcttcgtgaatactatttcaa 9980
Query: 264 aaggaattccatcgttaacaagtaaatctatcatctgtgcatcgtattcgctaaatccat 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9981 aaggaattccatcgttaacaagtaaatctatcatctgtgcatcgtattcgctaaatccat 10040
Query: 324 tattggcacttattagcaagaaactgcgacgtaactctcttcttntatgcaaataatcca 383
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 10041 tattggcacttattagcaagaaactgcgacgtaactctcttcttttatgcaaataatcca 10100
Query: 384 tcgtgactttcccttgttccacagttcctttagtaccatatcctgnagtatcaatgatgc 443
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 10101 tcgtgactttcccttgttccacagttcctttagtaccatatcctggagtatcaatgatgc 10160
Query: 444 gaaacttcccacctacattgaaacaattgatggtctttgtaaaacctgcctttttggang 503
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 10161 gaaacttcccacctacattgaaacaattgatggtctttgtaaaacctgcctttttggagg 10220
Query: 504 gcattgcatattcgnttaaactatttcttgtcacctncgtagtgacacttgttaaaagag 563
||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 10221 catttgcatattcgtttaaactatttcttgtcacctccgtagtgacactgtttaaaagag 10280
Query: 564 tagattttcctgaattacatcttcccaaaaacgcttattctggtaagtggttgatcaact 623
||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 10281 tagatttccctgaattacatcttcccaaaaacgctatttctggtagttggttgatcaact 10340
Query: 624 cgaatggaatccgggccgtcttaccttgatacattttattagaattaatctgagggacat 683
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10341 cgaatggaatcccgcccgtcttaccttgatacattttattagaattaatctgagggacat 10400
Query: 684 nctcagacgcaacagggaacgtcatcgaacc-ttcttgaaagttgttgatgcant-aatt 741
||||||||||||||| |||||||||||||| ||||||||||||||||||||| | ||||
Sbjct: 10401 cctcagacgcaacaggtaacgtcatcgaacctttcttgaaagttgttgatgcaataaatt 10460
Query: 742 caattttctcatccattattagttggattgcttgctgccttttttccatcaagcgcct-a 800
|| ||| ||||||||||| ||| |||||||||||||||||||||||||||||||| |
Sbjct: 10461 cattttcttcatccattatagtttgtattgcttgctgccttttttccatcaagcgcctaa 10520
Query: 801 ccttttcacctggtccattattga 824
|||||||||||||| ||| |||||
Sbjct: 10521 ccttttcacctggtacatcattga 10544
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6699
Number of Sequences: 1807
Number of extensions: 6699
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 985
length of database: 10,358,551
effective HSP length: 16
effective length of query: 969
effective length of database: 10,329,639
effective search space: 10009420191
effective search space used: 10009420191
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)