BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZA11RM1.SCF screened BAC_end
(1000 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1739 1211 0.0
>3x_Contig1739
Length = 22061
Score = 1211 bits (611), Expect = 0.0
Identities = 662/675 (98%), Gaps = 3/675 (0%)
Strand = Plus / Plus
Query: 47 cttgtatgaaagttgcgaagctccatagaagagaagtttgtaataatcatagaatctctc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10324 cttgtatgaaagttgcgaagctccatagaagagaagtttgtaataatcatagaatctctc 10383
Query: 107 attacctcttgagctggatttgttctgtttcattaattcacttttctcaaatgctagcat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10384 attacctcttgagctggatttgttctgtttcattaattcacttttctcaaatgctagcat 10443
Query: 167 gtacatgggcaaagttttcaaagaatctggtaagattaattgccccccagaagaaccgcc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10444 gtacatgggcaaagttttcaaagaatctggtaagattaattgccccccagaagaaccgcc 10503
Query: 227 acacagtgctctgtattgtgtaaagatttcaatgatcttgcggtcaatgttcttcctaat 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10504 acacagtgctctgtattgtgtaaagatttcaatgatcttgcggtcaatgttcttcctaat 10563
Query: 287 ttcattgaaattacagtcttccaatgtggctagcacatctttgatcattatgctactcac 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10564 ttcattgaaattacagtcttccaatgtggctagcacatctttgatcattatgctactcac 10623
Query: 347 cacatcttggtttataaacttgaagacttcgattacgttcgagttgacagctgcattagt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10624 cacatcttggtttataaacttgaagacttcgattacgttcgagttgacagctgcattagt 10683
Query: 407 attaattgcacgtactttacgtacaccatcgatatcagtatacaatagagctgcttggaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10684 attaattgcacgtactttacgtacaccatcgatatcagtatacaatagagctgcttggaa 10743
Query: 467 gcatatatcttctccgacctttagagtgtcatcgtacttgaatagcacgtcgaacttttg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10744 gcatatatcttctccgacctttagagtgtcatcgtacttgaatagcacgtcgaacttttg 10803
Query: 527 atctctggtgagtacagggattacaaggtcctcatcagtattcttta-actctccgaata 585
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 10804 atctctggtgagtacagggattacagggtcctcatcagtattctttacactctccgaata 10863
Query: 586 atagttgtaaactgacagtccggaggaacaacgcctttttagcataccttgataccccac 645
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 10864 atagttgtaaactgacagtccggaggaacaacgcacttttagcataccttgatacccgac 10923
Query: 646 tgtccattt-acactccttaaaa-gtcatttaacaatttgaattcatccttattgatgtt 703
||| ||||| ||||||| ||||| |||||| | ||||||||||||||||||||||||||
Sbjct: 10924 tgtgcatttcacactccctaaaatgtcattaacaaatttgaattcatccttattgatgtt 10983
Query: 704 gaaaatcgaatagtg 718
|||| ||||||||||
Sbjct: 10984 gaaattcgaatagtg 10998
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8338
Number of Sequences: 1807
Number of extensions: 8338
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 1000
length of database: 10,358,551
effective HSP length: 16
effective length of query: 984
effective length of database: 10,329,639
effective search space: 10164364776
effective search space used: 10164364776
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)