BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZA12FM1.SCF screened BAC_end
(995 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1590 1100 0.0
>3x_Contig1590
Length = 13653
Score = 1100 bits (555), Expect = 0.0
Identities = 626/647 (96%), Gaps = 2/647 (0%)
Strand = Plus / Plus
Query: 86 cgaaaactgaaatccagttacagcttttatgatagaagcggtaaatgaagataaactgtc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3894 cgaaaactgaaatccagttacagcttttatgatagaagcggtaaatgaagataaactgtc 3953
Query: 146 gcgagtagttaagtattcagtggaaggcgacccaaggcgattttcgatttaggaagtaaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954 gcgagtagttaagtattcagtggaaggcgacccaaggcgattttcgatttaggaagtaaa 4013
Query: 206 ccgatatacttacggaaatttaagtaaggcttatcaagacatcaaaaggaaaacaatggg 265
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4014 ccgatatacttacggaaaattaagtaaggcttatcaagacatcaaaaggaaaacaatggg 4073
Query: 266 gaagagtagtaaagataaacgtgatctgtactacagaaaggctaaggaacaaggataccg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4074 gaagagtagtaaagataaacgtgatctgtactacagaaaggctaaggaacaaggataccg 4133
Query: 326 tgcgagatccgctttcaagttattacagttagacgacgactttcattttttgcagcaggc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4134 tgcgagatccgctttcaagttattacagttagacgacgactttcattttttgcagcaggc 4193
Query: 386 tgtacgagtggtggacctttgcgctgctccgggatcttggtctcaggtcttgtctagaag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4194 tgtacgagtggtggacctttgcgctgctccgggatcttggtctcaggtcttgtctagaag 4253
Query: 446 actatttcctcagagttcagataattcagatagaaagattgttgcagttgatttgcagcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4254 actatttcctcagagttcagataattcagatagaaagattgttgcagttgatttgcagcc 4313
Query: 506 catgtcaccgatcgataatgtaatcacatttaca-gcggatattacacattctaaaactc 564
|||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||
Sbjct: 4314 catgtcaccgatcgataatgtaatcaca-ttacaggcggatattacacatcctaaaactc 4372
Query: 565 taccaaccatacccgagcttttttgaggtaagaaagctgattttatttgtagcgatggtg 624
||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4373 tacaaaccataaccgagctttttgagggtaagaaagctgattttatttgtagcgatggtg 4432
Query: 625 cgccagatgttaccggtttacccgatttagacaaattttttcaacagcagttaaatttta 684
|||||||||| |||||||||| |||||||||| | | | ||||||||||||||| ||| |
Sbjct: 4433 cgccagatgtcaccggtttacacgatttagacgagtatgttcaacagcagttaattttaa 4492
Query: 685 gcgccttacagctttttacctgtttgttaaggaaaggtggaaatttt 731
|||| |||||||| | ||||||||||||||| |||||||||||||||
Sbjct: 4493 gcgcattacagctatctacctgtttgttaagaaaaggtggaaatttt 4539
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7510
Number of Sequences: 1807
Number of extensions: 7510
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 995
length of database: 10,358,551
effective HSP length: 16
effective length of query: 979
effective length of database: 10,329,639
effective search space: 10112716581
effective search space used: 10112716581
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)