BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZA12RM1.SCF screened BAC_end
(983 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1748 1308 0.0
>3x_Contig1748
Length = 22566
Score = 1308 bits (660), Expect = 0.0
Identities = 761/786 (96%), Gaps = 7/786 (0%)
Strand = Plus / Plus
Query: 42 cttctcagggagagtatgaacgatttagaacgttataccgactagcagttgaaagatggc 101
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4670 cttctcagggagagtatgaacgatctagaacgttataccgactagcagttgaaagatggc 4729
Query: 102 caatttctgaagcattaaaggaacagcagattcagttcgagaagaagttcggctcttcga 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4730 caatttctgaagcattaaaggaacagcagattcagttcgagaagaagttcggctcttcga 4789
Query: 162 aaaatatggaggacatagtaatcgctaaaaggaaagccgagtacgagcaatatctaaaan 221
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4790 aaaatatggaggacatagtaatcgctaaaaggaaagccgagtacgagcaatatctaaaat 4849
Query: 222 ctgnatccctatcattattctacttggtgggtctatattgacctggttgaggaaaaatat 281
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4850 cag-atccctatcattattctacttggtgggtctatattgacctggttgaggaaaaatat 4908
Query: 282 caagagcaattgacatcagctttccagtcgttcattgaattggcaaagccgaagtccctg 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4909 caagagcaattgacatcagctttccagtcgttcattgaattggcaaagccgaagtccctg 4968
Query: 342 gtaaaggattcgagctggaagaggtacataagaatctgcgtacgatacttggtctatcta 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4969 gtaaaggattcgagctggaagaggtacataagaatctgcgtacgatacttggtctatcta 5028
Query: 402 gagctcaccattaatgatttgcctacgatacgctcggtttatcaagacatcctcgacatc 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5029 gagctcaccattaatgatttgcctacgatacgctcggtttatcaagacatcctcgacatc 5088
Query: 462 attccacataagaagtttacattcggtaaactgtggataatgtatgcagaattcgaaatt 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5089 attccacataagaagtttacattcggtaaactgtggataatgtatgcagaattcgaaatt 5148
Query: 522 aggcagaacaacttgctgaaagcaagaaaaattctgggtgtgagcttangaaagtccccc 581
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 5149 aggcagaacaacttgctgaaagcaagaaaaattctgggtgtgagcttaggaaagtccccc 5208
Query: 582 aagccaaaagtgttt-aatattacatcaatttggagataaggctaaaagagtttgataga 640
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5209 aagccaaaagtgtttaaatattacatcaatttggagataaggctaaaagagtttgataga 5268
Query: 641 gtgagaaagct-tacgag-aatacatcgatttc-attctagttcagtgcaatcatgggtg 697
||||||||||| |||||| |||||||||||||| || |||||||||||||||||||| ||
Sbjct: 5269 gtgagaaagctatacgagaaatacatcgatttcaatcctagttcagtgcaatcatggttg 5328
Query: 698 gattatgccgatttagaagaaaatttaggagatgaagattgattcagagggatctttgat 757
|||||||| || ||||||||||||||||||||||||||| ||| |||||||||| ||||
Sbjct: 5329 gattatgcagaattagaagaaaatttaggagatgaagatagatcaagagggatctatgat 5388
Query: 758 ttctccatgagcaattttgttgggattatttgaatcgga-cagcttattgccattcagcg 816
|||||||||||||| |||| ||||||| ||||||||| ||||| |||| |||||||||
Sbjct: 5389 atctccatgagcaataatgtt-ggattatctgaatcggaccagctgattgtcattcagcg 5447
Query: 817 ctatat 822
||||||
Sbjct: 5448 ctatat 5453
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6774
Number of Sequences: 1807
Number of extensions: 6774
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 983
length of database: 10,358,551
effective HSP length: 16
effective length of query: 967
effective length of database: 10,329,639
effective search space: 9988760913
effective search space used: 9988760913
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)