BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZB01FM1.SCF screened BAC_end
(1042 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1114 1160 0.0
>3x_Contig1114
Length = 6488
Score = 1160 bits (585), Expect = 0.0
Identities = 659/676 (97%), Gaps = 6/676 (0%)
Strand = Plus / Minus
Query: 98 ttaaatcaattaaatcgattaaaagagagatgggatagtctagtggaaagtgcaaagcag 157
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4582 ttaaatcaagtaaatcgattaaaagagagatgggatagtctagtggaaagtgcaaagcag 4523
Query: 158 aagaggaatcaacagcaagcataagtatgtatttttttaaagtatatcttaatcgttctt 217
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4522 aagaggaatcaacagcaagcataagtatgtattgctttaaagtatatcttaatcgttctt 4463
Query: 218 gttattttaatgcacaatttttgatganttcgattaactatttgaagggagaaattatat 277
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4462 gttattttaatgcacaatttttgatgatttcgattaactatttgaagggagaaattatat 4403
Query: 278 agtacaaacagacctccattcctctatttagccttgagcccgtgcataatctcttcctta 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4402 agtacaaacagacctccattcctctatttagccttgagcccgtgcataatctcttcctta 4343
Query: 338 gtgattagatgaccgatggtttcaatatggtctagtaattgatccacatttgccgaccat 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4342 gtgattagatgaccgatggtttcaatatggtctagtaattgatccacatttgccgaccat 4283
Query: 398 tcgttgagcagatcactagagttgtttggcttaccaaagttcacaatcttttcaggtcta 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4282 tcgttgagcagatcactagagttgtttggcttaccaaagttcacaatcttttcaggtcta 4223
Query: 458 tttatctttgcgtaaatgataccctggttgaccaaatcactgataaacgactctgtcttg 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4222 tttatctttgcgtaaatgataccctggttgaccaaatcactgataaacgactctgtcttg 4163
Query: 518 gcctcatctaaatctaatagctcctttaaccttggcaaagtaatttttgtataggatttt 577
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 4162 gcctcatctaaatctaatagctcctttaaccttggcaaagtaatttttgtatagta-ttt 4104
Query: 578 ggaaatgacacgcaagttgtgctctatgattctcttatgaagatcttcccagtgtgattc 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4103 ggaaatgacacgcaagttgtgctctatgattctcttatgaagatcttcccagtgtgattc 4044
Query: 638 attagacccgaatgcaccgccgtcctggttcaaaatttctttgtaggtatcttgaactaa 697
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 4043 attagacccgaatgcaacgccgtcctggttcaaaatttctttgtaggtatcttgtact-a 3985
Query: 698 tgggccatctcattaagttctggctggggggaaagagttttaccaaggatccttggggat 757
| |||||||||||| |||||| |||| || | |||||||||||||||||| ||| |||||
Sbjct: 3984 ttggccatctcatt-agttct-gctgtggtg-aagagttttaccaaggattctt-gggat 3929
Query: 758 ggcaatttctttagat 773
||||||||||||||||
Sbjct: 3928 ggcaatttctttagat 3913
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6244
Number of Sequences: 1807
Number of extensions: 6244
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 1042
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1026
effective length of database: 10,329,639
effective search space: 10598209614
effective search space used: 10598209614
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)