BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZB02RM1.SCF screened BAC_end
(1040 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig830 1556 0.0
>3x_Contig830
Length = 3109
Score = 1556 bits (785), Expect = 0.0
Identities = 906/936 (96%), Gaps = 8/936 (0%)
Strand = Plus / Plus
Query: 48 cttcggattcgaatgatgaggacatttcaagctctgaactatcagatgctcctgaactgt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23 cttcggattcgaatgatgaggacatttcaagctctgaactatcagatgctcctgaactgt 82
Query: 108 cattcaatttcaaaggcgacgatgggatcaagttcggtgatgcttcagtagcctccaaga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 cattcaatttcaaaggcgacgatgggatcaagttcggtgatgcttcagtagcctccaaga 142
Query: 168 aggctgatgaagatttaggtgaggaagtcaaggataaagatgtgaaacaacctttagatt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 aggctgatgaagatttaggtgaggaagtcaaggataaagatgtgaaacaacctttagatt 202
Query: 228 tcattataccaaatgtcgatagattggcggtaccgaaattttcagatagtgaggattcag 287
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ccattaaaccaaatgtcgatagattggcggtaccgaaattttcagatagtgaggattcag 262
Query: 288 attataatatcgatcaagaggcatatttcaagaccattgatgatgataacgaaaatatta 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 attataatatcgatcaagaggcatatttcaagaccattgatgatgataacgaaaatatta 322
Query: 348 ccggtatagataacggccttgagactggtgatgacgatatggctattctggatgttgaag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ccggtatagataacggccttgagactggtgatgacgatatggctattctggatgttgaag 382
Query: 408 aacagaatatggttaaacagcttgaacgtgatgatcattcttctttcgatgattcgcagg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aacagaatatggttaaacagcttgaacgtgatgatcattcttctttcgatgattcgcagg 442
Query: 468 tggaatcaaagtatagagatgggaaacccagaaatgacgacgatgattacgaatacgacg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tggaatcaaagtatagagatgggaaacccagaaatgacgacgatgattacgaatacgacg 502
Query: 528 aggacgatgaagatgatgcaatcatgagtgatttcgatatgcccttttatgaagatccca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aggacgatgaagatgatgcaatcatgagtgatttcgatatgcccttttatgaagatccca 562
Query: 588 agttttccaatctgtattactatgatggcagcgaccaaccctt-actttaagcacatctt 646
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 563 agttttccaatctgtattactatgatggcagcgaccaacccttaactttaagcacatctt 622
Query: 647 taccgttagtgttaagcgaagagaagcgtaagatggaagagcgtaagcaattaaaacagc 706
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 623 taccgttagtgttaagcgaagagaagcgtaagagggaagagcgtaagcaattaaaacagc 682
Query: 707 gggaaaggcangagagggtgaaaagaagaatgacttccaagaagtctaaacgtgaacatt 766
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gggaaaggcaggagaggttgaaaagaagaatgacttccaagaagtctaaacgtgaacatt 742
Query: 767 ttgctacttcagatcttgcagaagatgagtacgtattttggtttatttttccaaagcgat 826
||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 743 ctgctactccagatcttgcagaagatgagtacgta-tttgggttatttttccaaagcgat 801
Query: 827 gacgagaaacctaaatttcccattgacc-tgaatctccttttgcgtaggctcagtaccgg 885
||||||||||||||| || ||| ||||| ||||||||| ||||||||||||||||||||
Sbjct: 802 gacgagaaacctaaagttaccaatgaccttgaatctcc-tttgcgtaggctcagtaccgt 860
Query: 886 tgcagtattctgataaagagcttt-atcttgagatgaa-agtccgaagattttctattag 943
|||||| |||||||||||||||| |||| |||||||| ||| ||||||| |||||||||
Sbjct: 861 ggcagta-tctgataaagagctttcatctggagatgaagagtacgaagatattctattag 919
Query: 944 atttc-tccaccttccttcagatgataaggatgaaa 978
|| || |||||| ||| ||||||| |||||||||
Sbjct: 920 atatcgcccacctccctacagatgaagaggatgaaa 955
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8676
Number of Sequences: 1807
Number of extensions: 8676
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 1040
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1024
effective length of database: 10,329,639
effective search space: 10577550336
effective search space used: 10577550336
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)