BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZB03FM1.SCF screened BAC_end
(1037 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1166 1344 0.0
>3x_Contig1166
Length = 5040
Score = 1344 bits (678), Expect = 0.0
Identities = 808/842 (95%), Gaps = 7/842 (0%)
Strand = Plus / Minus
Query: 85 caactgttcttctaatcaaatgttctctcgattgaacaagacattgaatggaaacatctt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4371 caactgttcttctaatcaaatgttctctcgattgaacaagacattgaatggaaacatctt 4312
Query: 145 ctggggcgttttcaacagcgtatcttgtgaagtcgaaatctgtttgcgacgcagatggga 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4311 ctggggcgttttcaacagcgtatcttgtgaagtcgaaatctgtttgcgacgcagatggga 4252
Query: 205 atgagacctcaatttctttttttccaatctcaatcaacttatggaaatattccttcttct 264
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 4251 atgagacctcaatttctttgaaaccaatctcaatcaacttatggaaatattccttcttct 4192
Query: 265 gctcgacagacataggatctggtaaagattgattcccgtctcttagatcggtagaaagcc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4191 gctcgacagacataggatctggtaaagattgattcccgtctcttagatcggtagaaagcc 4132
Query: 325 acctaggagccttggtgatggtcttcgaaggccattgtctattttccaagttgatctgtg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4131 acctaggagccttggtgatggtcttcgaaggccattgtctattttccaagttgatctgtg 4072
Query: 385 ggtatggtctatatttcgtcgatggatcttttagcatattcttgtacgctagtttcactg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4071 ggtatggtctatatttcgtcgatggatcttttagcatattcttgtacgctagtttcactg 4012
Query: 445 gaggaatagcttttttcccagcctgtgctaaacgcacaacggtgttcctgaatatcatac 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4011 gaggaatagcttttttcccagcctgtgctaaacgcacaacggtgttcctgaatatcatac 3952
Query: 505 tcaatatggggtatggttgcctggtcgtatcacctttggaacagtagcttaatgtctccc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3951 tcaatatggggtatggttgcctggtcgtatcacctttggaacagtagcttaatgtctccc 3892
Query: 565 ctacatagctatcctatgaatcaactgcacaaactccgtgtcctaaaatctcaccagaca 624
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3891 ctaaatagctatcctatgaatcaactgcacaaactccgtgtcctaaaatctcaccagaca 3832
Query: 625 aagactgttctggtgcatatatatatatataagacatggctcatcacatcacgtcttttc 684
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 3831 aagactgttctggtgcatatatatatatataacacatggctcatcacatcacgtctttt- 3773
Query: 685 tgccgaaatttttcactcgattcagaatttttcagtttttcaatatttcagcatcggcag 744
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3772 tgccgaaatttttcactcgattcagaatttttcagtttttcaatatttcagcatcgccag 3713
Query: 745 -aaaaagtatcgccagaacttgactgtgagtaattcccattatagttttggcagggctat 803
||||||||||||||||||||||||||||||||||||||| |||||||| || |||| |
Sbjct: 3712 aaaaaagtatcgccagaacttgactgtgagtaattcccataatagtttt-tcatggct-t 3655
Query: 804 ttactttttctttctttacctggcggcaggaaaaaaagctttcttcgagggcgtggatga 863
|| |||||||||||||||| ||||| |||||||| |||||||||||| |||||
Sbjct: 3654 tttctttttctttctttactgttttgcagggaaaaaagc-ttcttcgagggccgtgatga 3596
Query: 864 atggagtccgtatagttcgttgattcctttttcgaaatccagtggggaaagttcaggcaa 923
||||||| |||| |||||| ||| | |||||||||||| ||| |||| ||||||||||||
Sbjct: 3595 atggagtacgtagagttcg-tgagtactttttcgaaatacagagggg-aagttcaggcaa 3538
Query: 924 ac 925
||
Sbjct: 3537 ac 3536
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,466
Number of Sequences: 1807
Number of extensions: 11466
Number of successful extensions: 1043
Number of sequences better than 1.0e-20: 1
length of query: 1037
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1021
effective length of database: 10,329,639
effective search space: 10546561419
effective search space used: 10546561419
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)