BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZB03RM1.SCF screened BAC_end
(1013 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1769 1475 0.0
>3x_Contig1769
Length = 25795
Score = 1475 bits (744), Expect = 0.0
Identities = 851/877 (97%), Gaps = 9/877 (1%)
Strand = Plus / Plus
Query: 45 cttgagatattgcttttcatgctacattagccactaatgtgaaaagataacatcgaaact 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13401 cttgagatattgcttttcatgctacattagccactaatgtgaaaagataacatcgaaact 13460
Query: 105 ctttagattacctttaaatgcctctcttcgtggaagtcggtccaatatcaccaagaccac 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13461 ctttagattacctttaaatgcctctcttcgtggaagtcggtccaatatcaccaagaccac 13520
Query: 165 gacgaatagaggcgcaggagacattcttccatctgtcaaaagaagtgaatatgctgcagc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13521 gacgaatagaggcgcaggagacattcttccatctgtcaaaagaagtgaatatgctgcagc 13580
Query: 225 cagacaaccaataacacagcattacataagagaagaggtactttttctatcaccgactgg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13581 cagacaaccaataacacagcattacataagagaagaggtactttttctatcaccgactgg 13640
Query: 285 aatttaaaagccgtccggaaaatcccattcttagattggacaatctgatgtttaactctt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13641 aatttaaaagccgtccggaaaatcccattcttagattggacaatctgatgtttaactctt 13700
Query: 345 gctttttttctctcccttagcagctcttgctaggaagcaattatcttgtgcaggcttaaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13701 gctttttttctctcccttagcagctcttgctaggaagcaattatcttgtgcaggcttaaa 13760
Query: 405 gtttcatggagaaccctattgacctggacctgtgcattgtatttctaatcgctacgcgtt 464
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 13761 gtttcatggagaaccctattgacctggacctgtgcattgtatttctaaagtctacgcgtt 13820
Query: 465 ctgtgcagttatactgagacatcaaatatggctgtgaagaaggagttccaataaagttat 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13821 ctgtgcagttatactgagacatcaaatatggctgtgaagaaggagttccaataaagttat 13880
Query: 525 ttttggattagctaatgtcagggacaaaggaaatgaatgcagctctcccttgcaccagag 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13881 ttttggattagctaatgtcagggacaaaggaaatgaatgcagctctcccttgcaccagag 13940
Query: 585 aatggtctatgggagtgcaatcttccgtcgtccattgacaccagctcggttcgtacagaa 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13941 aatggtctatgggagtgcaatcttccgtcgtccattgacaccagctcggttcgtacagaa 14000
Query: 645 agataatatttacctgccg-aataaacagaccacgcagtctggtgctggcgtgaggcttc 703
||||||||||||||||||| || |||||||||| |||||||||||||||||||||||| |
Sbjct: 14001 agataatatttacctgccgaaaaaaacagaccaggcagtctggtgctggcgtgaggctcc 14060
Query: 704 ccag-atgtctaggcccacacagccaaaacgactttctcgatcactttagtacgagaggg 762
|||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 14061 ccagaaggtctaggcccacacagccaaaacgacttcttcgatcactttagtacgagaggg 14120
Query: 763 cangccccagtcccattagnttgaaact-gtaactactattcccaatccgtcatcacgta 821
|| |||||||||||||||| ||| |||| |||||||||||||| | |||||||||||||
Sbjct: 14121 caggccccagtcccattagtttgtaactggtaactactattccaatcccgtcatcacgta 14180
Query: 822 tgccctttcggca-gtacatactaaatgatgagcttatgttttttcccg-aatctttttt 879
|||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct: 14181 tgcc--ttcggcaggtacatactaaatgatgagcttatgttttttcccgaaatctcttct 14238
Query: 880 tga-gtagaataac-agccattgtttcatgccttgtt 914
||| |||||||||| ||||||||||||||||||||||
Sbjct: 14239 tgaggtagaataacaagccattgtttcatgccttgtt 14275
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5912
Number of Sequences: 1807
Number of extensions: 5912
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 1013
length of database: 10,358,551
effective HSP length: 16
effective length of query: 997
effective length of database: 10,329,639
effective search space: 10298650083
effective search space used: 10298650083
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)