BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZB04FM1.SCF screened BAC_end
(994 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1264 1564 0.0
>3x_Contig1264
Length = 6524
Score = 1564 bits (789), Expect = 0.0
Identities = 882/908 (97%), Gaps = 5/908 (0%)
Strand = Plus / Minus
Query: 87 tcaagattcaacttcagaactggtacttttcttctttataaagacgaggaaatggaagat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 tcaagattcaacttcagaactggtacttttcttctttataaagacgaggaaatggaagat 917
Query: 147 ggtgctcaattaaggcagtcaattgagttctacttggaatttgtaccagaaaatagcggg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 ggtgctcaattaaggcagtcaattgagttctacttggaatttgtaccagaaaatagcggg 857
Query: 207 gaagaccttcagttaccttttttaccaagagatacatacacttatcattccccttatgag 266
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 856 gaagaccttcagttaccaaatctaccaagagatacatacacttatcattccccttatgag 797
Query: 267 aatgcagaggatgaacaaacagctgtcgatgcagaccaagatagaactgaagaccatatt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 aatgcagaggatgaacaaacagctgtcgatgcagaccaagatagaactgaagaccatatt 737
Query: 327 caagccatcgaaaccctgatagtagatgatgagcctgccgaggatgaaaggaataatttg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 caagccatcgaaaccctgatagtagatgatgagcctgccgaggatgaaaggaataatttg 677
Query: 387 aagaggcatctttcaaatagtattccatctccaccaacaaagacacccaagttgaatgca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aagaggcatctttcaaatagtattccatctccaccaacaaagacacccaagttgaatgca 617
Query: 447 tcacaatctgatgaagatgatcttatcctgctcgattaattgagcatcgctagtcttcca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tcacaatctgatgaagatgatcttatcctgctcgattaattgagcatcgctagtcttcca 557
Query: 507 tatctatagatatctgttttacagtgatggatatatatatatatataaacgcacattaaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tatctatagatatctgttttacagtgatggatatatatatatatataaacgcacattaaa 497
Query: 567 gaactgtaattataatagtacaacattttttggagttttattacgtagtaacatatggca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gaactgtaattataatagtacaacattttttggagttttattacgtagtaacatatggca 437
Query: 627 aatatgatgaggaaagtacaaacaatgattacaactgccagaaaaccaaaactgaaaaat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aatatgatgaggaaagtacaaacaatgattacaactgccagaaaaccaaaactgaaaaat 377
Query: 687 aaagaagaattcaaccattatcatagatgagaaaacagttatatgcccatttgccaaagn 746
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aaagaagaattcaaccattatcatagatgagaaaacagttatatgcccatttgccaaagt 317
Query: 747 tgaaatattgtgtgacaaacattacggtatatcaggttattctcgaatagatgatcttga 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tgaaatattgtgtgacaaacattacggtatatcaggttattctcgaatagatgatcttga 257
Query: 807 atgactntttagtctttgcaaccaagattctcgttttttggatctgggtntgacgtt-ct 865
|||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| ||
Sbjct: 256 atgactttttagtctttgcaaccaagattctcgttttttggatcttggt-tgacgttcct 198
Query: 866 tttggccatcttcnaagtcgctgtctgtccttgaggttgggaaataatttttacttattg 925
|||||||||||| ||||||||||||||| ||||||||||||||| || |||||||||
Sbjct: 197 cttggccatcttcgaagtcgctgtctgtctttgaggttgggaaatcatctttacttatgc 138
Query: 926 ccactatgngaggcangtgt-acatttttgcactatttg-gcttgccgtcttgcgca-ca 982
||||||| ||||| ||| |||||||||||||||||| ||| |||||||||||| ||
Sbjct: 137 ccactattgaaggcagttgtaacatttttgcactatttgtgctgcccgtcttgcgcagca 78
Query: 983 taggcgaa 990
||||||||
Sbjct: 77 taggcgaa 70
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,172
Number of Sequences: 1807
Number of extensions: 12172
Number of successful extensions: 1397
Number of sequences better than 1.0e-20: 1
length of query: 994
length of database: 10,358,551
effective HSP length: 16
effective length of query: 978
effective length of database: 10,329,639
effective search space: 10102386942
effective search space used: 10102386942
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)