BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZB04RM1.SCF screened BAC_end
(999 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1507 1725 0.0
>3x_Contig1507
Length = 11359
Score = 1725 bits (870), Expect = 0.0
Identities = 937/953 (98%), Gaps = 5/953 (0%)
Strand = Plus / Plus
Query: 48 cttccaaatccagttttcggttatttatgttatgaaagtttgataaatttaattcgtgag 107
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 10023 cttccaaatccagttttcggttatcaatgttatgaaagtttgataaatttaattcgtgag 10082
Query: 108 aataacctgttgattgagcttccattaaacaatagtttaaagcaaccagatctttttacc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10083 aataacctgttgattgagcttccattaaacaatagtttaaagcaaccagatctttttacc 10142
Query: 168 aacattttggtaaagttaagcgacatattgaaaactctgcctattcaacatttagtggtt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10143 aacattttggtaaagttaagcgacatattgaaaactctgcctattcaacatttagtggtt 10202
Query: 228 ttgaaacttttatgcaaccatttagaactgatcatgaggtatcaagaggataatctgatg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10203 ttgaaacttttatgcaaccatttagaactgatcatgaggtatcaagaggataatctgatg 10262
Query: 288 aatttgcataatttggctcttgtctttgctcctgggctaatcaaggattattctggtgaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10263 aatttgcataatttggctcttgtctttgctcctgggctaatcaaggattattctggtgaa 10322
Query: 348 aaagatattgtggatatgaaggaaaggaattatttgatcggacttgtattacaaaattat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10323 aaagatattgtggatatgaaggaaaggaattatttgatcggacttgtattacaaaattat 10382
Query: 408 agagagatttttaaagttcttcaacaaaagatagatgcataaatacattgatgcggcaaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10383 agagagatttttaaagttcttcaacaaaagatagatgcataaatacattgatgcggcaaa 10442
Query: 468 aacttaatatattgcgagagaatcttgagcgtgtatatattgtgttaaatacttataaat 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10443 aacttaatatattgcgagagaatcttgagcgtgtatatattgtgttaaatacttataaat 10502
Query: 528 gtaatatgtggaaggtttaagagctaaagtgatcccatcattcacgtaatattggaatca 587
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 10503 gtaatatgtggaaggtttaagagctaaagtgatcccatcattcaggtaatattggaatca 10562
Query: 588 agtatgacaaagaaatcgtcggaatgggataggtctctcataaagaaaaagcgcacagga 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10563 agtatgacaaagaaatcgtcggaatgggataggtctctcataaagaaaaagcgcacagga 10622
Query: 648 tgtattcagaaactagtgtttcttatataaatcattataatcattactggtatgtcgtta 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10623 tgtattcagaaactagtgtttcttatataaatcattataatcattactggtatgtcgtta 10682
Query: 708 ttcaacattggtctaatgcaatccataatatctacgttatgtagctttagtgaatatctt 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10683 ttcaacattggtctaatgcaatccataatatctacgttatgtagctttagtgaatatctt 10742
Query: 768 tcaactcgggtgttgcatacatctccaaccgcctgatacctaccctcagtaaatgctcta 827
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 10743 tcaactcgggtgttgcatacatctccaaccgcctgttacctacccttagtaaatgctcta 10802
Query: 828 tggtactgaaatcttttcgtgaaaggcctttgaacttaccgaactctgtccttatgtatg 887
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10803 tggtactgaaatctttccgtgaaaggcctttgaacttaccgaactctgtccttatgtatg 10862
Query: 888 tgatnaaatgtgggcctgatttctattggtttcttatgtgcaggtctaacggcattgcct 947
|||| |||||| |||||| |||||||||||||||||||||||| ||||| |||||||||
Sbjct: 10863 tgataaaatgt-ggcctgttttctattggtttcttatgtgcagtcctaac-gcattgcct 10920
Query: 948 atacaaa-gaataacttccttttgt-attcactaagtctc-ttgccatcgttt 997
||||||| ||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct: 10921 atacaaatgaataacttccttttgtaatccactaagtctctttgccatcgttt 10973
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7791
Number of Sequences: 1807
Number of extensions: 7791
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 999
length of database: 10,358,551
effective HSP length: 16
effective length of query: 983
effective length of database: 10,329,639
effective search space: 10154035137
effective search space used: 10154035137
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)