BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZB05FM1.SCF screened BAC_end
(1023 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 1633 0.0
>3x_Contig1785
Length = 37935
Score = 1633 bits (824), Expect = 0.0
Identities = 912/936 (97%), Gaps = 6/936 (0%)
Strand = Plus / Minus
Query: 94 tccagaattgagacttcccatcgttttctaatttttccaaacggactctttcgacatagt 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15401 tccagaattgagacttcccatcgttttctaatttttccaaacggactctttcgacatagt 15342
Query: 154 gttgggattcaggtaacatcaacctccaagcaatgaaaagcactgggggcccggcactga 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15341 gttgggattcaggtaacatcaacctccaagcaatgaaaagcactgggggcccggcactga 15282
Query: 214 accagaatatttttttccaaccatgtggagaattatcaacaatagctctttggaacacga 273
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15281 accagaatatagctctccaaccatgtggagaattatcaacaatagctctttggaacacga 15222
Query: 274 cacctaataaataaccgaaagcataaccttcttggaatataccagaaaggatggacttag 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15221 cacctaataaataaccgaaagcataaccttcttggaatataccagaaaggatggacttag 15162
Query: 334 ccttgtttggagcattttccaaggcagtggcagaagcaacaccaaatacagatcccataa 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15161 ccttgtttggagcattttccaaggcagtggcagaagcaacaccaaatacagatcccataa 15102
Query: 394 tgataccaaagatagctctacaccccaagaaagcagagaaagaattaacgaaccctgtac 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15101 tgataccaaagatagctctacaccccaagaaagcagagaaagaattaacgaaccctgtac 15042
Query: 454 cgatttgaataacgataatgagagccatagttaaaacaaatgagtattttctaccatatc 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15041 cgatttgaataacgataatgagagccatagttaaaacaaatgagtattttctaccatatc 14982
Query: 514 tgtcacccaaataaccaaagataagagcaccgatgacccttaatagcaacaccaaagtaa 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14981 tgtcacccaaataaccaaagataagagcaccgatgacccttaatagcaacaccaaagtaa 14922
Query: 574 tggcatgagaaatatcttttacaggtctgtctagatccttggccaaatttgtcatgttca 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14921 tggcatgagaaatatcttttacaggtctgtctagatccttggccaaatttgtcatgttca 14862
Query: 634 atgaaacggcaaagaaatctaacgcatcccaagtccatgctaagaacccaacgataaagt 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14861 atgaaacggcaaagaaatctaacgcatcccaagtccatgctaagaacccaacgataaagt 14802
Query: 694 attgtgtttgcaaccagttcatcgaacgtaaggcagggaaaggatttatagggtattctt 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14801 attgtgtttgcaaccagttcatcgaacgtaaggcagggaaaggatttatagggtattctt 14742
Query: 754 tccttgcttctctaatcgatgcttttgttgggaac-cagtangtattcttgtagccaaat 812
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 14741 tccttgcttctctaatcgatgcttttgttgggaacaaagtaggtattcttgtagccaaat 14682
Query: 813 attttctagcatcactccatgtgatcctagattgcggtttcaaatatgtgattctacctt 872
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14681 atttcttagcatcactccatgtgatcctagattgcggtttcaaatatgtgattctacctt 14622
Query: 873 ctgcttttt-aagtgaagcgatggattcatcgcgagacactattgattctgcagccatgg 931
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14621 ctgctttttcaagtgaagcgatggattcatcgcgagacactattgattctgcagccatgg 14562
Query: 932 gtatattntttttttgatgtcgaagnctg-gaatttctttctggtatctaggtc-atatc 989
|||||| ||||||||||||||||| ||| || |||||| || ||||||| || |||||
Sbjct: 14561 ttatattttttttttgatgtcgaagtctgtgagtttcttcttgttatctagttctatatc 14502
Query: 990 catcaaag--tttaccccacgtgaaagctcgaaacc 1023
|||||||| || |||| ||||||||||||||||||
Sbjct: 14501 catcaaaggtttaacccaacgtgaaagctcgaaacc 14466
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6935
Number of Sequences: 1807
Number of extensions: 6935
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 1023
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1007
effective length of database: 10,329,639
effective search space: 10401946473
effective search space used: 10401946473
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)