BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZB05RM1.SCF screened BAC_end
(1021 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1768 1703 0.0
>3x_Contig1768
Length = 25668
Score = 1703 bits (859), Expect = 0.0
Identities = 936/954 (98%), Gaps = 6/954 (0%)
Strand = Plus / Plus
Query: 47 atttccaggaaatgtgagcaaatccacttagaaggaataaaaggagaaaaaaccaggctt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1941 atttccaggaaatgtgagcaaatccacttagaaggaataaaaggagaaaaaaccaggctt 2000
Query: 107 tcagagaaaaagtgcgtcagaaaccgagggagcatgaagcggaaggaatacgattcctca 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2001 tcagagaaaaagtgcgtcagaaaccgagggagcatgaagcggaaggaatacgattcctca 2060
Query: 167 agcctcagcaaaagtgcaatggtaacgacactcctaggttaaccagaagaaatagaatag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2061 agcctcagcaaaagtgcaatggtaacgacactcctaggttaaccagaagaaatagaagag 2120
Query: 227 aacagtgaaatgattcggaagggaaaaggaaggaaacatgaggggaaaacacgctcgaca 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2121 aacagtgaaatgattcggaagggaaaaggaaggaaacatgaggggaaaacacgctcgaca 2180
Query: 287 atccgaagactatcgttaatgtctaccctctccccgccaagatcctccgtgccactccaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2181 atccgaagactatcgttaatgtctaccctctccccgccaagatcctccgtgccactccaa 2240
Query: 347 tcctcattctatctcccgcgcgaagcaactggaaaccctcttcaagcccggaaacgttag 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2241 tcctcattctatctcccgcgcgaagcaactggaaaccctcttcaagcccggaaacgttag 2300
Query: 407 ttttttagttgtaatgttggccaaaaactgagtctgtaacagtaatatcctctatgagga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2301 ttttttagttgtaatgttggccaaaaactgagtctgtaacagtaatatcctctatgagga 2360
Query: 467 catttcagttgttacactgaaaagaacagatactacacttgatctaagccaataggcaaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2361 catttcagttgttacactgaaaagaacagatactacacttgatctaagccaataggcaaa 2420
Query: 527 gagatttggctttttaagcaaaactcaaaaaagattcgcgaacttataatacatagtgag 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2421 gagatttggctttttaagcaaaactcaaaaaagattcgcgaacttataatacatagtgag 2480
Query: 587 aagtgaatgaatctcagactttgttccttttatactaaaatttttttcactttccattgc 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2481 aagtgaatgaatctcagactttgttccttttatactaaaatttttttcactttccattgc 2540
Query: 647 ttgtttcgtaaaacgtgatttatggtactccccccataattggattgaaatatttatgat 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2541 ttgtttcgtaaaacgtgatttatggtactccccccataattggattgaaatatttatgat 2600
Query: 707 acgtaaggctctgtgatatgaatggccttagagcattagaatcaacgangttgttatgag 766
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2601 acgtaaggctctgtgatatgaatggccttagagcattagaatcaacgagtttgttatgag 2660
Query: 767 ttggagggccaaatctgatctataactgtctgattgtgtt-gtttcaaagtactgaggtg 825
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2661 ttggagggccaaatctgatctataactgtctgattgtgttggtttcaaagtactgaggtg 2720
Query: 826 ttgttagaaactttacttctttcattttatcagcttacgtacctattccatttgtttgag 885
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2721 ttgttagaaactttacttctttcattttatcagcttacgtacctattccattgttttgag 2780
Query: 886 gagctgttatt-aag-atacccaagccattt-tacacagatgcctgtcagcagtgataaa 942
|||||||||| ||| |||| ||||| |||| |||||||||||||| ||||||||||||
Sbjct: 2781 aagctgttattcaagaatacacaagcaatttatacacagatgcctgcaagcagtgataaa 2840
Query: 943 ctccaaccgaaagatc-gccgaccattgagctggaac-gaaacttgctgtccag 994
|| ||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct: 2841 cttcaaccgaaagatcagcagaccattgagctggaacagaaacttgctgtccag 2894
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6772
Number of Sequences: 1807
Number of extensions: 6772
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 1021
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1005
effective length of database: 10,329,639
effective search space: 10381287195
effective search space used: 10381287195
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)