BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZB06FM1.SCF screened BAC_end
(1010 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1641 1560 0.0
>3x_Contig1641
Length = 13261
Score = 1560 bits (787), Expect = 0.0
Identities = 858/873 (98%), Gaps = 7/873 (0%)
Strand = Plus / Plus
Query: 85 cacgacgaatccatctatgtctagaaggaactctgtctctcagtttagacgtgagtctat 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12383 cacgacgaatccatctatgtctagaaggaactctgtctctcagtttagacgtgagtctat 12442
Query: 145 gcaagcaggtttcattgatatgcccataaaacaaagctctcaaccccctccttcatccgt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12443 gcaagcaggtttcattgatatgcccataaaacaaagctctcaaccccctccttcatccgt 12502
Query: 205 atgtgccgttggatcattttttgtctttgcaaaaccttggtctggcgatgaggataagtt 264
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 12503 atgtgccgttggatcattcaatggctttgcaaaaccttggtctggcgatgaggataagtt 12562
Query: 265 gttggtagaaaaacgtcaaaggtaccacttgtccattgatgagctttcaatcttgttacc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12563 gttggtagaaaaacgtcaaaggtaccacttgtccattgatgagctttcaatcttgttacc 12622
Query: 325 tcatagatcagaacaagagatccaatggagaatggattcgttacatataacgcctagcga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12623 tcatagatcagaacaagagatccaatggagaatggattcgttacatataacgcctagcga 12682
Query: 385 tgcagttagtactgctagtccttccgccaatgttaatcaatcgagttcttcagatgaggt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12683 tgcagttagtactgctagtccttccgccaatgttaatcaatcgagttcttcagatgaggt 12742
Query: 445 ccactctacttactcaccagatactgccgtagaggagcatgacgacattgacgatgttga 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12743 ccactctacttactcaccagatactgccgtagaggagcatgacgacattgacgatgttga 12802
Query: 505 tgttgatgtagagattgttggccgcatggaagactctattgccccaactcagctaagaga 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12803 tgttgatgtagagattgttggccgcatggaagactctattgccccaactcagctaagaga 12862
Query: 565 tgaatctcctacgttttctcaaacatcttcgactggttcttccgctcgtgagagatcgcc 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12863 tgaatctcctacgttttctcaaacatcttcgactggttcttccgctcgtgagagatcgcc 12922
Query: 625 agtgttttcaccggacgctcattccttgagagaccattctccaactatttctgatgtgaa 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12923 agtgttttcaccggacgctcattccttgagagaccattctccaactatttctgatgtgaa 12982
Query: 685 caactcatctttttatggcaataggatgcctgccagcgtaccgaagcaaattcttcanac 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 12983 caactcatctttttatggcaataggatgcctgccagcgtaccgaagcaaattcttcaaac 13042
Query: 745 acaggctagtaatgaacaaacgccccagttcactccgaattcatcgcaatctcct-cacc 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 13043 acaggctagtaatgaacaaacgccccagttcactccgaattcatcgcaatctcctgaacc 13102
Query: 804 accaca-aaacatcgactaccgcaagtgccaactcagccactgcctagtttg-atacgat 861
|||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 13103 accacataaccatcgactaccgcaagtgccaactcagccactgcctagtttgaatacgat 13162
Query: 862 attcaagcacattgtttgatgataaactgtctgtatt-ataccattatcaag-accanaa 919
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||
Sbjct: 13163 attcaagcacattgtttgatgataaactgtctgtattaataccattatcaagaaccaaaa 13222
Query: 920 actt-aaaaactac-ttacaaaccactttcaga 950
|||| ||||||||| ||||||||||||||||||
Sbjct: 13223 acttaaaaaactactttacaaaccactttcaga 13255
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5585
Number of Sequences: 1807
Number of extensions: 5585
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 1010
length of database: 10,358,551
effective HSP length: 16
effective length of query: 994
effective length of database: 10,329,639
effective search space: 10267661166
effective search space used: 10267661166
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)