BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZB07RM1.SCF screened BAC_end
(1012 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1680 1419 0.0
>3x_Contig1680
Length = 12597
Score = 1419 bits (716), Expect = 0.0
Identities = 791/808 (97%), Gaps = 6/808 (0%)
Strand = Plus / Plus
Query: 42 aagcctgcagtaactcggcttttgcagttactatgtcgtcatagtttagagcgcttattg 101
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6803 aagcttgcagtaactcggcttttgcagttactatgtcgtcatagtttagagcgcttattg 6862
Query: 102 catacttagcacttcgttgtgctttttgaatcctgtgctcccttgacattatttctttca 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6863 catacttagcacttcgttgtgctttttgaatcctgtgctcccttgacattatttctttca 6922
Query: 162 aagtagcaacatcatgtctcactgccggtttaggtgattctaatttgatcggttctggcg 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6923 aagtagcaacatcatgtctcactgccggtttaggtgattctaatttgatcggttctggcg 6982
Query: 222 ttagcaactttattggaacttctggcgactcaagctgctttaacttctcaacggattcat 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6983 ttagcaactttattggaacttctggcgactcaagctgctttaacttctcaacggattcat 7042
Query: 282 ctaccttcaaagagggagacggaccatgctgctgtgctatttccgaatcttttggctctt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7043 ctaccttcaaagagggagacggaccatgctgctgtgctatttccgaatcttttggctctt 7102
Query: 342 cgaatagcggctgatcctctagatcctcgacaaaatttgggatttcatcttccacttcgc 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7103 cgaatagcggctgatcctctagatcctcgacaaaatttgggatttcatcttccacttcgc 7162
Query: 402 ttagtgggttactatttgtaggttctgatgtggtttcttggggcttcttgtcgctttgta 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7163 ttagtgggttactatttgtaggttctgatgtggtttcttggggcttcttgtcgctttgta 7222
Query: 462 attgtccccttttcaatttcataagatagtatttggaatgtttgatccttttatcgcatt 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7223 attgtccccttttcaatttcataagatagtatttggaatgtttgatccttttatcgcatt 7282
Query: 522 gctcttttacaatggcatccatactatccgcccatatatgtttacagcattgaaacaaat 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7283 gctcttttacaatggcatccatactatccgcccatatatgtttacagcattgaaacaaat 7342
Query: 582 ctatacagcaccatagcccctttcctatatcgtcattaatcctatcatcttgtatttgta 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7343 ctatacagcaccatagcccctttcctatatcgtcattaatcctatcatcttgtatttgta 7402
Query: 642 ctaagatttcgttatagattgacatcgcaagatttaacacaaaagccaatgctttgtctt 701
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7403 ctaagattccgttatagattgacatcgcaagatttaacacaaaagccaatgctttgtctt 7462
Query: 702 tttcattcaacaggatcttagtcccttcattattcaccttattttttaaagctctctaca 761
|||||||||||||||||||||| ||||||| |||||||| | ||||||||||||||||||
Sbjct: 7463 tttcattcaacaggatcttagtaccttcatcattcacctca-tttttaaagctctctaca 7521
Query: 762 ttgtctaat-atgacatgacccactctgtc-ctttcccgtctcgctccttttaatt-aat 818
| ||||||| ||||||||||| |||||||| ||| ||||||||||||||| | ||| |||
Sbjct: 7522 tcgtctaataatgacatgaccaactctgtcgcttccccgtctcgctccttctcattcaat 7581
Query: 819 a-tagctctg-cgcatatagtttaaagt 844
| |||||||| |||||||||||| ||||
Sbjct: 7582 attagctctgccgcatatagttttaagt 7609
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7352
Number of Sequences: 1807
Number of extensions: 7352
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 1012
length of database: 10,358,551
effective HSP length: 16
effective length of query: 996
effective length of database: 10,329,639
effective search space: 10288320444
effective search space used: 10288320444
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)