BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZB08FM1.SCF screened BAC_end
(980 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1374 1049 0.0
>3x_Contig1374
Length = 8985
Score = 1049 bits (529), Expect = 0.0
Identities = 590/605 (97%), Gaps = 4/605 (0%)
Strand = Plus / Minus
Query: 90 ccttggttcaaacatacatattcagagcaccaattgtgtgggtgaagtganttatcaatc 149
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 8666 ccttggttcaaacatacatattcagagcaccaattgtgtgggtgaagtga-ttatcaatc 8608
Query: 150 ttttcaataatacttagctggaaaattcactcgttttcaatccagtttcaatcaagttag 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8607 ttttcaataatacttagctggaaaattcactcgttttcaatccagtttcaatcaagttag 8548
Query: 210 atccaggttttattaggggcgttgagatagtaattcagcatccgatatcacctatccgga 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8547 atccaggttttattaggggcgttgagatagtaattcagcatccgatatcacctatccgga 8488
Query: 270 cttgaaaccactgaggcacttgtcattccttttccgtgaaaatggttcttgaaaaaatcc 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8487 cttgaaaccactgaggcacttgtcattccttttccgtgaaaatggttcttgaaaaaatcc 8428
Query: 330 gagtgtcttctgaaggggagttcattgactctcatgatcgtgtggtacaacttcgtggag 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8427 gagtgtcttctgaaggggagttcattgactctcatgatcgtgtggtacaacttcgtggag 8368
Query: 390 tgaacttggatccatgcgtcaaatacccgaattcaccaaccgtaacttcgcactctccgt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8367 tgaacttggatccatgcgtcaaatacccgaattcaccaaccgtaacttcgcactctccgt 8308
Query: 450 tacttgactcattttgggattcagcagatgatgcgaactttgtaaaccatcctatcgaca 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8307 tacttgactcattttgggattcagcagatgatgcgaactttgtaaaccatcctatcgaca 8248
Query: 510 ttgatgaagtaaatgaacatattactagattgaagtcgatggggtataataccattcgat 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8247 ttgatgaagtaaatgaacatattactagattgaagtcgatggggtataataccattcgat 8188
Query: 570 tctgttttaattgggaagctttggagcataaaggtcccagggc-gttcgattttgagtac 628
||||||||||||||||||| ||||||||||| ||||| ||||| || |||||||||||||
Sbjct: 8187 tctgttttaattgggaagcattggagcataagggtcc-agggcagtacgattttgagtac 8129
Query: 629 attgagtacctacgctaagttttattgaaaatttttgaaatcgg-gaaatgtacctgtat 687
||||||||| |||| ||||| |||||||||| | ||||||||| || |||||| |||||
Sbjct: 8128 attgagtacgtacgtcaagttctattgaaaatatatgaaatcggtgatatgtacgtgtat 8069
Query: 688 tttga 692
|||||
Sbjct: 8068 tttga 8064
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,512
Number of Sequences: 1807
Number of extensions: 15512
Number of successful extensions: 375
Number of sequences better than 1.0e-20: 1
length of query: 980
length of database: 10,358,551
effective HSP length: 16
effective length of query: 964
effective length of database: 10,329,639
effective search space: 9957771996
effective search space used: 9957771996
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)