BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZB09FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1781 1041 0.0
>3x_Contig1781
Length = 20717
Score = 1041 bits (525), Expect = 0.0
Identities = 619/641 (96%), Gaps = 8/641 (1%)
Strand = Plus / Minus
Query: 86 tatcgccctttgggtttaaattaataactctttcaccgacttttaaatgttgagcatcga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9053 tatcgccctttgggtttaaattaataactctttcaccgacttttaaatgttgagcatcga 8994
Query: 146 tggcagcgtctcttgcaggtttttctctgaaatcaaccacagcgaacgaatcttggaatg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8993 tggcagcgtctcttgcaggtttttctctgaaatcaaccacagcgaacgaatcttggaatg 8934
Query: 206 aggtttttacgacatcaccgtattcttttattagagctctttcaagttcggatgcggtca 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8933 aggtttttacgacatcaccgtattcttttattagagctctttcaagttcggatgcggtca 8874
Query: 266 acccatttgtgttacccacgtatactgggtagaaaccgctgctgttttggatgataacgt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8873 acccatttgtgttacccacgtatactgggtagaaaccgctgctgttttggatgataacgt 8814
Query: 326 cgcctattggtttcgattgctgcttgcttttcttgtttgacttggtgaatccgtttggag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8813 cgcctattggtttcgattgctgcttgcttttcttgtttgacttggtgaatccgtttggag 8754
Query: 386 gtggacttttagacttcttttgtggaagatctaccttgatgtagtttgtagttagtttag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8753 gtggacttttagacttcttttgtggaagatctaccttgatgtagtttgtagttagtttag 8694
Query: 446 atgtcttgttgagtttg-cctgcccaagtcattttcactggttcagccttttgggtgact 504
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 8693 atgtcttgttgagtttgccctgcccaagtcattttcactggttcagcctttggggtgact 8634
Query: 505 tctgtttcangaacctcttgt-ggggcaccgattcag-acggggtgtcgttga-gtttgg 561
||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||| ||| ||
Sbjct: 8633 tctgtttcaggaacctcttgtgggggcaccgattcagaacgggttgtcgttgaggttggg 8574
Query: 562 gtggctgatgctgaattcgcttgctcttttggntg-gcttgngcttcgncttccttggct 620
||||||||||||||| |||||||||||||||| || ||||| |||||| |||||||| ||
Sbjct: 8573 gtggctgatgctgaagtcgcttgctcttttggttgtgcttgtgcttcgtcttccttgtct 8514
Query: 621 tctttttctttttctgcaatagcagcaggagccttaactggcgcaa-cgcctcaatttcc 679
|||||||||||||||||||||||||||||||| || ||||||||| ||||||| |||||
Sbjct: 8513 tctttttctttttctgcaatagcagcaggagcagtagctggcgcaatcgcctcattttcc 8454
Query: 680 ttaggtttag-tttatttactg-aacggtttggggttgttc 718
|||||||||| ||||||||||| ||||| ||||||||||||
Sbjct: 8453 ttaggtttagttttatttactgaaacggcttggggttgttc 8413
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6962
Number of Sequences: 1807
Number of extensions: 6962
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)