BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZB09RM1.SCF screened BAC_end
(1019 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1292 0.0
>3x_Contig1807
Length = 66587
Score = 1292 bits (652), Expect = 0.0
Identities = 706/720 (98%), Gaps = 3/720 (0%)
Strand = Plus / Plus
Query: 46 ctttgtgataatatgaagtggttagaatctttctgttgaagaaacaaaaggttctgtgga 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28751 ctttgtgataatatgaagtggttagaatctttctgttgaagaaacaaaaggttctgtgga 28810
Query: 106 attgaaaagcatcataacaatgctaagaatactgcagtgaaaggtgttgcaaaaagtttc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28811 attgaaaagcatcataacaatgctaagaatactgcagtgaaaggtgttgcaaaaagtttc 28870
Query: 166 acagcgctgccctcatacaatgacaccatctcagctatagatgatgatgaaggtgctgtt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28871 acagcgctgccctcatacaatgacaccatctcagctatagatgatgatgaaggtgctgtt 28930
Query: 226 tgcgtttctgtacctgagccattttgtttatggtcggttccagtctcgatcgacgaatca 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28931 tgcgtttctgtacctgagccattttgtttatggtcggttccagtctcgatcgacgaatca 28990
Query: 286 gacgtgatcctcatatcgactgaaggaccagaggtactttcagttgcagtagtactagaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28991 gacgtgatcctcatatcgactgaaggaccagaggtactttcagttgcagtagtactagaa 29050
Query: 346 acctcgtcctcgttaatccctgtattatgggacctttcagtgttggacattccatccttt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29051 acctcgtcctcgttaatccctgtattatgggacctttcagtgttggacattccatccttt 29110
Query: 406 tttgattctgttgcattggaaagttctgtactggatctttcacctggtgactttgagggg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29111 tttgattctgttgcattggaaagttctgtactggatctttcacctggtgactttgagggg 29170
Query: 466 agagacttttgagatgttttctcgctaacggtgccatcaatagagcaagtggtggtgtaa 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29171 agagacttttgagatgttttctcgctaacggtgccatcaatagagcaagtggtggtgtaa 29230
Query: 526 acagtggtgacgccattgcttgtaatagtgactgtactcaaggagatggtccgctgcgtc 585
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 29231 acagtggtgacgccattgcttgtaatagtgactgtactcaaggagatggtcggctgcgtc 29290
Query: 586 aaagaagtaccagcagtggctggatcagacgtattttcagatgcagtctcagttgcggtg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29291 aaagaagtaccagcagtggctggatcagacgtattttcagatgcagtctcagttgcggtg 29350
Query: 646 gtttcagaagtgaaattatttctcgtagtggggaccgtattcaaggagaagg-tggatct 704
|||||||| |||| ||||||||||||||||| ||| |||||||||||||||| |||||||
Sbjct: 29351 gtttcagaggtgagattatttctcgtagtggtgacagtattcaaggagaaggttggatct 29410
Query: 705 gttgaaggtagtt-cagtcgttattgagtttaaagtagtagaatttcttgaccagccaat 763
|||| |||||||| |||||||||||||||| | |||||||| ||||| ||||||||||
Sbjct: 29411 gttg-aggtagttccagtcgttattgagttagatgtagtagagtttctgaaccagccaat 29469
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7610
Number of Sequences: 1807
Number of extensions: 7610
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 1019
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1003
effective length of database: 10,329,639
effective search space: 10360627917
effective search space used: 10360627917
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)