BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZB10FM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1114 1296 0.0
>3x_Contig1114
Length = 6488
Score = 1296 bits (654), Expect = 0.0
Identities = 777/802 (96%), Gaps = 12/802 (1%)
Strand = Plus / Minus
Query: 85 aggaaattcagcgtccaagatttcggtataatctttctctgccttaattggagcgtctct 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3119 aggaaattcagcgtccaagatttcggtataatctttctctgccttaattggagcgtctct 3060
Query: 145 ggacatattttacgatataatttatactcttttctctttgctctgcctgctcaacttaaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3059 ggacatattttacgatataatttatactcttttctctttgctctgcctgctcaacttaaa 3000
Query: 205 ccgaaatgcaatacaatcattttctctgtatccgtcctgtattcaaaccacacaaactta 264
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2999 ccgaaatgcaatacaatcaatttctctgtatccgtcctgtattcaaaccacacaaactta 2940
Query: 265 cagtctcagaaccgacactgtaacctgctgtacctctgttcgcggttatttcgtatatat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2939 cagtctcagaaccgacactgtaacctgctgtacctctgttcgcggttatttcgtatatat 2880
Query: 325 ttgccacctgtaactgatttcctttatttctcataatgcctttaaaatgacaagctacgg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2879 ttgccacctgtaactgatttcctttatttctcataatgcctttaaaatgacaagctacgg 2820
Query: 385 taaaagcttcctcagtaacagtaacaatcgaatcttagaaaaacgtgacttcatcatcgt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2819 taaaagcttcctcagtaacagtaacaatcgaatcttagaaaaacgtgacttcatcatcgt 2760
Query: 445 tcgtaatgattgtgctggatattcgggtaaccttgatttgattttattgtgcgggtaact 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2759 tcgtaatgattgtgctggatattcgggtaaccttgatttgattttattgtgcgggtaact 2700
Query: 505 attttctttcttttcggtgaaaaagcattaaaagtttgacagaagatgaattgagcgatg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2699 attttctttcttttcggtgaaaaagcattaaaagtttgacagaagatgaattgagcgatg 2640
Query: 565 agatgagatgagatgggattaaatcaaaggctgtcagaaggttcagtatcttggccgatt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2639 agatgagatgagatgggattaaatcaaaggctgtcagaaggttcagtatcttggccgatt 2580
Query: 625 gtattgaattgacttgcatcatcagttgtgtttaga-cattcttcttgtctgtgggcaaa 683
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2579 gtattgaattgacttgcatcatcagttgtgtttagaccattcttcttgtctgtgggcaaa 2520
Query: 684 ta-gttacaaagtcgaataataatgggtggttcacagttgaagactttgaagcccgcttt 742
|| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 2519 taggttacaaagtcgaataataatgggtggttcacagttgaagaacttgaaggccgcttt 2460
Query: 743 aaa-gctaatgggttgactgttcagaacaatgtcaag-agagttct-agaaggaaggcaa 799
||| |||||||||||||||| ||||| |||||||||| |||||||| ||||| | |||||
Sbjct: 2459 aaaggctaatgggttgactggtcagaccaatgtcaagaagagttctaagaagaagggcaa 2400
Query: 800 at-tccca-ggagtttgtttga-aagaaagacagaa-act-ttggaaggatta-ggaaca 853
|| ||||| |||||||| | || ||||||||||||| ||| ||| ||| |||| ||||||
Sbjct: 2399 atctcccagggagtttgatagagaagaaagacagaagactattgaaagaattagggaaca 2340
Query: 854 gttt-atccgtttgatgggaaa 874
|||| |||||||||||| ||||
Sbjct: 2339 gtttaatccgtttgatgtgaaa 2318
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8304
Number of Sequences: 1807
Number of extensions: 8304
Number of successful extensions: 398
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)