BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZB10RM1.SCF screened BAC_end
(983 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1444 1427 0.0
>3x_Contig1444
Length = 7580
Score = 1427 bits (720), Expect = 0.0
Identities = 779/795 (97%), Gaps = 4/795 (0%)
Strand = Plus / Plus
Query: 45 cttcttcgacaatgcatcattcaaaaagaaagtcattcggccatactcatcggtcctcga 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4132 cttcttcgacaatgcatcattcaaaaagaaagtcattcggccatactcatcggtcctcga 4191
Query: 105 tccaattataaagatatgataataaagcatcatttggaggctttaagatcgacacacaac 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4192 tccaattataaagatatgataataaagcatcatttggaggctttaagatcgacacacaac 4251
Query: 165 gaacaattcattgttatcaacttaaatggctctttacattcggaaaactctgcaattaac 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4252 gaacaattcattgttatcaacttaaatggctctttacattcggaaaactctgcaattaac 4311
Query: 225 agtattgctgaacaattagaattcgaacttgcaaacagaaacgttaattcatcaaaaaaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4312 agtattgctgaacaattagaattcgaacttgcaaacagaaacgttaattcatcaaaaaaa 4371
Query: 285 gttaaagcagaagaattaggtttatctgaaggtactttgacagaagtctttgataacatt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4372 gttaaagcagaagaattaggtttatctgaaggtactttgacagaagtctttgataacatt 4431
Query: 345 ctaagattgttggactcatttactgtgactcctctaaagggtgtacactcacagaaagaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4432 ctaagattgttggactcatttactgtgactcctctaaagggtgtacactcacagaaagaa 4491
Query: 405 aaatcagagcacgtaacgctagtgttcatatttgatgaaattgacaaatttgctggacca 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4492 aaatcagagcacgtaacgctagtgttcatatttgatgaaattgacaaatttgctggacca 4551
Query: 465 gtgagacagacacttttgtataatttatttgacctagtagagacttcaaggataccagtt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4552 gtgagacagacacttttgtataatttatttgacctagtagagacttcaaggataccagtt 4611
Query: 525 tgtgttcttggtcttactacaaagttggcaatcatgcanatttcttgaaaacagagtgaa 584
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 4612 tgtgttcttggtcttactacaaagttggcaatcatgca-atttcttgaaaacagagtgaa 4670
Query: 585 atcccggttttctcagcgaatcatatatatgccatcaatctcggattatgatcaattcaa 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4671 atcccggttttctcagcgaatcatatatatgccatcaatctcggattatgatcaattcaa 4730
Query: 645 gcatgtattcaaagagcctttagaggtggatgattcaacatttcctgatcagcttcgatg 704
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4731 gcatgtattcaaagagctcttagaggtggatgattcaacaattcctgatcagcttcgatg 4790
Query: 705 g-accagttcttggatgagactt--aaaaatgacgattcagagatttctcgtattctgcg 761
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 4791 gaaccagttcttggatgagactttaaaaaatgacgattcagagatttctcgtattctgcg 4850
Query: 762 tcagaactacgagaacttctaagaaatacaactatttacaaacgccatatttccaacatt 821
||||||||||||||||||| |||| ||||||||||| ||||||||||||||| ||| |
Sbjct: 4851 tcagaactacgagaacttcaaagatatacaactattacaaaacgccatatttcccacagt 4910
Query: 822 gcccttgtctaaaac 836
|||||||||||||
Sbjct: 4911 tgccttgtctaaaac 4925
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8232
Number of Sequences: 1807
Number of extensions: 8232
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 983
length of database: 10,358,551
effective HSP length: 16
effective length of query: 967
effective length of database: 10,329,639
effective search space: 9988760913
effective search space used: 9988760913
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)