BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZB11FM1.SCF screened BAC_end
(1010 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1303 1499 0.0
>3x_Contig1303
Length = 8112
Score = 1499 bits (756), Expect = 0.0
Identities = 828/845 (97%), Gaps = 6/845 (0%)
Strand = Plus / Minus
Query: 86 tcaaggttactgctgctcgcatcgagagattgggagtattaaagattaacgccaagagta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7386 tcaaggttactgctgctcgcatcgagagattgggagtattaaagattaacgccaagagta 7327
Query: 146 aacatgtcgtcatcagtaatcttgaagagatataatattttactcaaacgtaacccgtta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7326 aacatgtcgtcatcagtaatcttgaagagatataatattttactcaaacgtaacccgtta 7267
Query: 206 ttaactaaatgcataacatgttcggtattaactgggttaagcgaactgttcagtcaatgg 265
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 7266 ttaactaaatgcataacaggcgcggtattaactgggttaagcgaactgttcagtcaatgg 7207
Query: 266 gttagtctgtctccagaggaaagaaaagagaagctaaattggatcaaagtggcattgatg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7206 gttagtctgtctccagaggaaagaaaagagaagctaaattggatcaaagtggcattgatg 7147
Query: 326 agtctatatggtggtctatttaacgcaccagttaatcatttcagttacaaatggataaac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7146 agtctatatggtggtctatttaacgcaccagttaatcatttcagttacaaatggataaac 7087
Query: 386 gaatacacaattaggaaagtggtatccaaatatagaagcttggtccagttaggctgctca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7086 gaatacacaattaggaaagtggtatccaaatatagaagcttggtccagttaggctgctca 7027
Query: 446 ttaggcatggtatcgcctattcaagtgttagggttactatttaccttgacttctgttaac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7026 ttaggcatggtatcgcctattcaagtgttagggttactatttaccttgacttctgttaac 6967
Query: 506 aacggtaaggttgacaaaacaaaaattatacacgcaatcaagacaagatatgcggcaatg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6966 aacggtaaggttgacaaaacaaaaattatacacgcaatcaagacaagatatgcggcaatg 6907
Query: 566 ttgtcttccagcttggcaacatcaacggtattgatgtcaattgctcaaagatacatttca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6906 ttgtcttccagcttggcaacatcaacggtattgatgtcaattgctcaaagatacatttca 6847
Query: 626 ccagataaatggtccgtattttttagtttggcatacgcaattctgggtacggctcagaat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6846 ccagataaatggtccgtattttttagtttggcatacgcaattctgggtacggctcagaat 6787
Query: 686 atttatttgaagaaattcaagaaataagggtcttgatccattctgataaaatattacttt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6786 atttatttgaagaaattcaagaaataagggtcttgatccattctgataaaatattacttt 6727
Query: 746 cattctt-tagggaagaatctctctccgcanattctcttgaatcattcggtttttatcgt 804
||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 6726 cattcttcaaggaaagaatctctctccgcaaattctcttgaatcattcggtttttatcgt 6667
Query: 805 cctcagtttgatcgttttctgaaga-aaagatatgggactcatcggtangttattccaat 863
||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||
Sbjct: 6666 cctcagtttgatcgttttctgaagacaaagatattggactcatcggtagtttattccaat 6607
Query: 864 ggtncaattcgcttttc-agcctctgttctcg-ttcttagctt-tcgactt-agcattga 919
| | ||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||
Sbjct: 6606 gttccaattcgcttttcaagcctctgttctcgtttcttagcttctcgacttcagcattga 6547
Query: 920 ggcgt 924
|||||
Sbjct: 6546 ggcgt 6542
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7227
Number of Sequences: 1807
Number of extensions: 7227
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 1010
length of database: 10,358,551
effective HSP length: 16
effective length of query: 994
effective length of database: 10,329,639
effective search space: 10267661166
effective search space used: 10267661166
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)