BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZB11RM1.SCF screened BAC_end
(1030 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1485 1766 0.0
>3x_Contig1485
Length = 9830
Score = 1766 bits (891), Expect = 0.0
Identities = 965/982 (98%), Gaps = 6/982 (0%)
Strand = Plus / Plus
Query: 43 cttctacttgatatataccctatcaatgtgccacaaattaccataaatgaggatgaagtg 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8205 cttctacttgatatataccctatcaatgtgccacaaattaccataaatgaggatgaagtg 8264
Query: 103 aatgagacatggaatcaagaactagaagcgttaaaaagcatttatgagtctaacttcgaa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8265 aatgagacatggaatcaagaactagaagcgttaaaaagcatttatgagtctaacttcgaa 8324
Query: 163 caactcaacgctagttcttacaagatcaatctcaacgatgagttcaaaatcaaactgatt 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8325 caactcaacgctagttcttacaagatcaatctcaacgatgagttcaaaatcaaactgaag 8384
Query: 223 gtttacaagacaaagtcctacccacaaactcttcctggtattgtcgtgtccacattcgac 282
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8385 gtctacaagacaaagtcctacccacaaactcttcctggtattgtcgtgtccacattcgac 8444
Query: 283 aaatcatacaagcttccaaattacataaagctaacaattctagaaaagcttttacatttt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8445 aaatcatacaagcttccaaattacataaagctaacaattctagaaaagcttttacatttt 8504
Query: 343 cttgaagagtctcaactaattggtgacatgtgcgtttaccatattgtcgattggctccag 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8505 cttgaagagtctcaactaattggtgacatgtgcgtttaccatattgtcgattggctccag 8564
Query: 403 caaaatttatctgagattatcgaaaatcctggtccgttactaacaaaagaacgcattgaa 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8565 caaaatttatctgagattatcgaaaatcctggtccgttactaacaaaagaacgcattgaa 8624
Query: 463 atcacttctaataatttgatcaaaagcactaataaaaaaagaagattcaatgccagaacc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 8625 atcacttctaataatttgatcaaaagcactaataaaaaaagaagattcaatgccagagcc 8684
Query: 523 tctaaattgtcgaatcaagagg-tttcagagttggaagatgaatatagaaagaggcagaa 581
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 8685 tctaaattgtcgaatcaagaggttttcagagttggaagatgaatatagaaagaggcagaa 8744
Query: 582 aagtaatgaattccatactatgagggaacagcgctcaaagctaccggcttggaaaataca 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8745 aagtaatgaattccatactatgagggaacagcgctcaaagctaccggcttggaaaataca 8804
Query: 642 gaattctatcgtagagcttataaattctaatgatgttgttcttattacaggtgaaactgg 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8805 gaattctatcgtagagcttataaattctaatgatgttgttcttattacaggtgaaactgg 8864
Query: 702 ttcgggtaaatcaacacaggtcgttcaatttgtccttgataatttaatgcaacatggcga 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8865 ttcgggtaaatcaacacaggtcgttcaatttgtccttgataatttaatgcaacatggcga 8924
Query: 762 ttttgacaagacgtncataatctgcacacagccaagaaagatatctgcaattggtctagc 821
||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 8925 tttgaacaagacgtccataatctgcacacagccaagaaggatatctgcaattggtctagc 8984
Query: 822 ggagcgtgtatcacaggaaacggtgtgtcaaatgtggtgatgaagtagggtatatttatt 881
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8985 ggagcgtgtatcacagg-aacggtgtgtcaaatgtggtgatgaagtagggtata-ttatt 9042
Query: 882 aga-gtgttaattctgacaaaaagtgctaccagaattaaattcatgacaactggtgttct 940
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9043 agaggtgttaa-tctgacaaaaagtgctaccagaattaaattcatgacaactggtgttct 9101
Query: 941 tgtttcgtattctacaagaagatgtcacttccttgaatgactgcgtggttgttatcgatg 1000
|| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 9102 tg-ttcgtattctacaaggagatgtcactttcttgaatgactgcgtggttgttatcgatg 9160
Query: 1001 aagttcacgaaaggttcataga 1022
||||||||||||||| ||||||
Sbjct: 9161 aagttcacgaaaggtccataga 9182
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8373
Number of Sequences: 1807
Number of extensions: 8373
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 1030
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1014
effective length of database: 10,329,639
effective search space: 10474253946
effective search space used: 10474253946
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)