BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZB12RM1.SCF screened BAC_end
(1012 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1749 1221 0.0
>3x_Contig1749
Length = 22923
Score = 1221 bits (616), Expect = 0.0
Identities = 804/852 (94%), Gaps = 11/852 (1%)
Strand = Plus / Plus
Query: 44 cttcgtaccaaatcccattgctctgtagtggtaagcatatgtttcgaaagtaagtaatca 103
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 21228 cttcgtaccaaatcccattgctctgcagtggtaagcatatgtttcgaaagtaagtaatca 21287
Query: 104 aatgcctcgtaatttttaacgtcaacttgcactgcttctttaaagcattctttggcctgt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21288 aatgcctcgtaatttttaacgtcaacttgcactgcttctttaaagcattctttggcctgt 21347
Query: 164 tccatgttactaagggagacgtatattctgcctcttaacaaacacattgacgattcgagc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21348 tccatgttactaagggagacgtatattctgcctcttaacaaacacattgacgattcgagc 21407
Query: 224 tttacaccaccatctgcattccctggagaggacggttcactttgaaacgggttcgtgtct 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21408 tttacaccaccatctgcattccctggagaggacggttcactttgaaacgggttcgtgtct 21467
Query: 284 ccgatgatatcaagtgcctcttcaagtttgtttaatttgaaaagacataatgctgccaag 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21468 ccgatgatatcaagtgcctcttcaagtttgtttaatttgaaaagacataatgctgccaag 21527
Query: 344 tagcggcacattatgctttccgaatccaattgatccgtaaatattagttccacggctcgc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21528 tagcggcacattatgctttccgaatccaattgatccgtaaatattagttccacggctcgc 21587
Query: 404 acgtaagatccttgattgtaatacacttgtgccaaccaaaaggcatcgttgggatccttt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21588 acgtaagatccttgattgtaatacacttgtgccaaccaaaaggcatcgttgggatccttt 21647
Query: 464 gtcattgaatagatgagatcaccgatgtgttcggcagttttataatggtgttgcatcaag 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21648 gtcattgaatagatgagatcaccgatgtgttcggcagttttataatggtgttgcatcaag 21707
Query: 524 gcatcgtgccttcaaagccgtagtttctct-cagatgaaagatcgctaacatcgaataca 582
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 21708 gcatcgtgcctccaaagccgtagtttctctacagatgaaagatcgctaacatcgaataca 21767
Query: 583 ttatcgctggcatggtctatatcttcgtcattcgtagaaatg-ttagctcaacagtgttc 641
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
Sbjct: 21768 ttatcgctggcatggtctatatcttcgtcattcgtagaattgtttagctcaacagtgtcc 21827
Query: 642 gtcgatgtactagttttttttaagata-ac-gcagtgccggtccaaatatttcatttttt 699
|||||||||||||||||| |||| || || |||||||||||||||||| | |||| |||
Sbjct: 21828 gtcgatgtactagtttttcttaaagtagacggcagtgccggtccaaataatccattcttt 21887
Query: 700 gtcatcgacgcttatagactagatactgcattacaattgtggcctcttaaccgcaaggag 759
|||||||||||| ||||||||||| ||||| ||| ||||| ||||| |||| || |||||
Sbjct: 21888 gtcatcgacgctaatagactagatcctgcagtaccattgt-gcctcataacggc-aggag 21945
Query: 760 ttgctataatggataccattttttattttttggactaaaagacttttattttgatgccgg 819
|||||| | ||||| ||| | |||| || || |||||| ||||| ||| |||||| |||
Sbjct: 21946 ttgctaaatgggata-catctcttatcttctgcactaaaggacttctatcttgatg-cgg 22003
Query: 820 agtttttgccatctggggttttgttgctttcgcccactttaaaggttccttcc-ggagaa 878
||| | ||| ||||| || | |||||| ||||||||| || || ||||||||| |||||
Sbjct: 22004 agtctgtgcgatctgcgg-tatgttgc-ttcgcccaccttcaacgttccttccttgagaa 22061
Query: 879 ttccttattgga 890
|||| |||||||
Sbjct: 22062 ttccctattgga 22073
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7702
Number of Sequences: 1807
Number of extensions: 7702
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 1012
length of database: 10,358,551
effective HSP length: 16
effective length of query: 996
effective length of database: 10,329,639
effective search space: 10288320444
effective search space used: 10288320444
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)