BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZC01RM1.SCF screened BAC_end
(1018 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig691 733 0.0
>3x_Contig691
Length = 2698
Score = 733 bits (370), Expect = 0.0
Identities = 430/450 (95%)
Strand = Plus / Plus
Query: 40 caagctttctattaccgtggaggacagaatgcccagacatcacgctatgagttctcctcg 99
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 964 caagctttctattaccgtggaggacagaaggcccagacatcacgctatgagttctcctcg 1023
Query: 100 tgccaatcttttcggttcgttgaagaaacttgaaacgaccaaggctttgagagactgtta 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 tgccaatcttttcggttcgttgaagaaacttgaaacgaccaaggctttgagagactgtta 1083
Query: 160 cggtaaaagacacccagatgccatcccatggttacctggtgaagaaagtttggtccatga 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 cggtaaaagacacccagatgccatcccatggttacctggtgaagaaagtttggtccatga 1143
Query: 220 tggttttttctacgaatttgaagtggaagatctatactacgttggtggatacggtttcca 279
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1144 tggtgcattctacgaatttgaagtggaagatctatactacgttggtggatacggtttcca 1203
Query: 280 agcttacattggagatatcgatggtgaattgtatcacgaatctgaaccattgaagttgaa 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204 agcttacattggagatatcgatggtgaattgtatcacgaatctgaaccattgaagttgaa 1263
Query: 340 atggggtaagaagcaccacaagggacataaggaagatagggaacacgatgacaagggtga 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1264 atggggtaagaagcaccacaagggacataaggaagatagggaacacgatgacaagggtga 1323
Query: 400 tgacgagaatattcaacctattgatgatatgatgcaacctaatgattataagatacattc 459
||||||||| | ||||||| ||||| | || ||||||||| ||| | |||| ||||||
Sbjct: 1324 tgacgagaagaagcaacctaaggatgagaagaagcaacctaaggatgagaagaaacattc 1383
Query: 460 tattgacgagaataatcattctaaggatga 489
|| |||||||| || ||||||||||||||
Sbjct: 1384 taaggacgagaagaagcattctaaggatga 1413
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,810
Number of Sequences: 1807
Number of extensions: 10810
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 1018
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1002
effective length of database: 10,329,639
effective search space: 10350298278
effective search space used: 10350298278
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)