BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZC02RM1.SCF screened BAC_end
(978 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1492 1283 0.0
>3x_Contig1492
Length = 8701
Score = 1283 bits (647), Expect = 0.0
Identities = 767/797 (96%), Gaps = 8/797 (1%)
Strand = Plus / Plus
Query: 41 ctttcgtcagattggctgatctgttatttttggttcccttgcaagggatccattatacac 100
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 6999 ctttcgtcagattggctgatctggaatttttggttcccttgcaagggatccattatacac 7058
Query: 101 caatcgttgatttatggaatatgctttatctacgagagtacaagaaattaccgaaaaaca 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7059 caatcgttgatttatggaatatgctttatctacgagagtacaagaaattaccgaaaaaca 7118
Query: 161 ccacacagtcggatttgaaaaaaagaaatgaggctaaagcgaaggccaagttggattttt 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 7119 ccacacagtcggatttgaaaaaaagaaatgaggctaaagcgaaggccaagttggagttca 7178
Query: 221 t-agaattgtatcatctccatcccaggattcaaatggtaagatctttttaacagattcag 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7179 acagaattgtatcatctccatcccaggattcaaatggtaagatctttttaacagattcag 7238
Query: 280 gaactggtttcaaaaaagttaatgaatctgtttctttgactttcaatttggagagatact 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7239 gaactggtttcaaaaaagttaatgaatctgtttctttgactttcaatttggagagatact 7298
Query: 340 tgaaatcaagaagatcaaaccagttagtccagtttgccaaatcaagaattggaactactt 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7299 tgaaatcaagaagatcaaaccagttagtccagtttgccaaatcaagaattggaactactt 7358
Query: 400 catccaaaatttatgctgtagctctttccatgacagaacaacactccaacgggttgagtc 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7359 catccaaaatttatgctgtagctctttccatgacagaacaacactccaacgggttgagtc 7418
Query: 460 atccactttccaagactggccttttccaagaccttgatgaaagaacttctttggaagaag 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7419 atccactttccaagactggccttttccaagaccttgatgaaagaacttctttggaagaag 7478
Query: 520 acctcaaacttgacgaagaanatgtaaaaggtgtttcattcactgcacttgatgtggcga 579
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 7479 acctcaaacttgacgaagaaaatgtaaaaggtgtttcattcactgcacttgatgtggcga 7538
Query: 580 gaagactcccaagcaacttggatttaagaagtactctagttcactcaaaccagtcattat 639
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 7539 gaagactcccaagcaacttggatttaagaggtactctagttcactcaaaccagtcattaa 7598
Query: 640 aacgaaaacaaaagcatanccaatcaccaccttcattttgagaaaagaattcaaacagaa 699
|||||||||||||||||| |||||||||||| ||| |||||||||||||| ||||||||
Sbjct: 7599 aacgaaaacaaaagcataaccaatcaccacc-tcaatttgagaaaagaatcaaaacagaa 7657
Query: 700 gatggcttcgtagtaccaccatttgccaccctttatggaaagaaagttgaggagaaaatt 759
||||||||||||||||||||| |||||| || |||||| ||||||| |||||| ||| |
Sbjct: 7658 gatggcttcgtagtaccacca-ttgccaaccgttatgg-aagaaag-tgaggaagaaaat 7714
Query: 760 gaagaa-gagattgccaccttagatctcgacgaagatgatagtgattcctcgttctgtat 818
|||||| |||| ||||| | ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 7715 gaagaaggaga-tgccaacctagatctcgacgaagatgatagtga-tcctcgttctgtat 7772
Query: 819 ccgtagtgaatggccat 835
| ||||||||||||||
Sbjct: 7773 cgttagtgaatggccat 7789
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,115
Number of Sequences: 1807
Number of extensions: 10115
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 978
length of database: 10,358,551
effective HSP length: 16
effective length of query: 962
effective length of database: 10,329,639
effective search space: 9937112718
effective search space used: 9937112718
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)