BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZC03FM1.SCF screened BAC_end
(1048 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 1435 0.0
>3x_Contig1785
Length = 37935
Score = 1435 bits (724), Expect = 0.0
Identities = 823/852 (96%), Gaps = 4/852 (0%)
Strand = Plus / Plus
Query: 86 ccttgtctcgttttcgtcatatgtggcgctatgctcaaaagatgtcatatttacaacagg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22072 ccttgtctcgttttcgtcatatgtggcgctatgctcaaaagatgtcatatttacaacagg 22131
Query: 146 ttcatccagaccgataatcctttttgcaatccattctttgaataatatgcaggtctagta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22132 ttcatccagaccgataatcctttttgcaatccattctttgaataatatgcaggtctagta 22191
Query: 206 aaatcaagtttgaacgcaatttctgcttctactggataaaactcactgctagctacttta 265
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 22192 aaatcaagtttgaacgcaattactgcttctactggataaaactcactgctagctacttta 22251
Query: 266 ctttttaccaaaatagacaacttcaatgtcgcatttttaccaaccaggacacaataccta 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22252 ctttttaccaaaatagacaacttcaatgtcgcatttttaccaaccaggacacaataccta 22311
Query: 326 cccatacaaatcatgacttcaaaatgattgctctcctgttttgtatttatatcttatact 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22312 cccatacaaatcatgacttcaaaatgattgctctcctgttttgtatttatatcttatact 22371
Query: 386 catatattccaacttctagtattcccttaatttgtcctgtaaagttattctcttctttgt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22372 catatattccaacttctagtattcccttaatttgtcctgtaaagttattctcttctttgt 22431
Query: 446 ccaaaggcgttgcacttcaatcaataaattgacatggcaatgacagcgctccacgtataa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22432 ccaaaggcgttgcacttcaatcaataaattgacatggcaatgacagcgctccacgtataa 22491
Query: 506 aatatcatcaaaaatctcattgcgctcgagaacaagaccagtattaaaaatgaaactgtg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22492 aatatcatcaaaaatctcattgcgctcgagaacaagaccagtattaaaaatgaaactgtg 22551
Query: 566 gataaaagagaataaacttggtggggtaagttgattggaccgcagctcatttttattgta 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22552 gataaaagagaataaacttggtggggtaagttgattggaccgcagctcatttttattgta 22611
Query: 626 agtccattntatggngtatataattctgaattcgttgctttaagtttgggttaggtttca 685
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22612 agtccattttatggggtatataattctgaattcgttgctttaagtttgggttaggtttca 22671
Query: 686 ttagaaacccctattaagggaagttttgaagntaatcaatcatactgccagtgtctgtgn 745
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 22672 ttagaaaccctaattaagggaagttttgaagttaatcaatcatactgccagtgtctgtgc 22731
Query: 746 cataggggaattaagagctgcttaccaaactataagtagaggataaattattgtctattg 805
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 22732 aataggggaataaagagctgcttagcaaactataagtagaggataaattattgtctattg 22791
Query: 806 aaaaagctccttattaatatatatgttgggaaggactgactattttggaataacttgttt 865
||||||||||||| ||||||||||| |||||| |||||||||||||| |||||| |||||
Sbjct: 22792 aaaaagctccttaataatatatatg-tgggaaagactgactattttgtaataac-tgttt 22849
Query: 866 tgcttgctccgatgttccggaagcttttattggag-tagacttatttttgcggtaggttg 924
| ||||| ||||| | ||||||||| ||||| |||||||||| ||||| |||||||
Sbjct: 22850 tcgctgctcgattgttcggaaagctttta-tggagttagacttattcttgcgttaggttg 22908
Query: 925 aaaaaccgaata 936
|||| ||||||
Sbjct: 22909 caaaatcgaata 22920
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8017
Number of Sequences: 1807
Number of extensions: 8017
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 1048
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1032
effective length of database: 10,329,639
effective search space: 10660187448
effective search space used: 10660187448
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)