BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZC03RM1.SCF screened BAC_end
(1039 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1214 1421 0.0
>3x_Contig1214
Length = 6334
Score = 1421 bits (717), Expect = 0.0
Identities = 805/827 (97%), Gaps = 6/827 (0%)
Strand = Plus / Plus
Query: 48 tggctgcttgtattttgaacaagttgagaggtcaagttcaagtttgtgccgttaaagctc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5274 tggctgcttgtattttgaacaagttgagaggtcaagttcaagtttgtgccgttaaagctc 5333
Query: 108 caggtttcggtgataacaggaagaacaccttgggcgatattgccatcttgtctggtggta 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5334 caggtttcggtgataacaggaagaacaccttgggcgatattgccatcttgtctggtggta 5393
Query: 168 ctgtcttcactgaagaattggacctaaagccagaaaacgctaccatccaacatttgggtt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5394 ctgtcttcactgaagaattggacctaaagccagaaaacgctaccatccaacatttgggtt 5453
Query: 228 cttgtgattctgtttctattaccaaggaagataccgttatcttgaatggtaacggtccaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5454 cttgtgattctgtttctattaccaaggaagataccgttatcttgaatggtaacggtccaa 5513
Query: 288 aagaaaacatcgaaaccagaattgaacaaatcaagaactctattgacttgaccactacca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5514 aagaaaacatcgaaaccagaattgaacaaatcaagaactctattgacttgaccactacca 5573
Query: 348 actcttacgaaaaggaaaagttgcaagaacgtttagctaagttgtccggcggtgttgccg 407
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5574 agtcttacgaaaaggaaaagttgcaagaacgtttagctaagttgtccggcggtgttgccg 5633
Query: 408 tcattagagtcggtggttcttccgaagtcgaagtcggcgaaaagaaggaccgttacgatg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5634 tcattagagtcggtggttcttccgaagtcgaagtcggcgaaaagaaggaccgttacgatg 5693
Query: 468 acgctttgaacgctacaagagctgctgtcgaagaaggtatcttgccaggtggtggtactg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5694 acgctttgaacgctacaagagctgctgtcgaagaaggtatcttgccaggtggtggtactg 5753
Query: 528 ctttgctaaaggcttctagagtcttggacgaagtcgcaacagaaaactttgaccaaaagt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5754 ctttgctaaaggcttctagagtcttggacgaagtcgcaacagaaaactttgaccaaaagt 5813
Query: 588 tgggtgttgacatcatcagaaaggccatttccagaccagctagaaagatcatcgagaacg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5814 tgggtgttgacatcatcagaaaggccatttccagaccagctagaaagatcatcgagaacg 5873
Query: 648 ctggtgaagaaggctccgttatcgtcggtaagattattgatgaatacggncaagacttta 707
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 5874 ctggtgaagaaggctccgttatcgtcggtaagattatcgatgaatacggccaagacttta 5933
Query: 708 -caagggttacaatgcagccaa-agtgaatacaccgacatgtnggctgctggta-tatcg 764
||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||
Sbjct: 5934 ccaagggttacaatgcagccaagggtgaatacaccgacatgttggctgctggtattatcg 5993
Query: 765 atccattcaaggttggcagaaacgggcttatagacgctgctggtgttgc-tctcttattg 823
||||||||||||||| ||||| ||| || ||||||||||||||||||| ||||| | |
Sbjct: 5994 atccattcaaggttgtcagaagcggtctagtagacgctgctggtgttgcttctctattgg 6053
Query: 824 ctacaac-gaaggtgctattgttgatgctccaaag-cagctggtgct 868
|||| || |||| |||||| ||||||||||||||| |||||||||||
Sbjct: 6054 ctaccactgaagttgctatcgttgatgctccaaagccagctggtgct 6100
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7482
Number of Sequences: 1807
Number of extensions: 7482
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 1039
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1023
effective length of database: 10,329,639
effective search space: 10567220697
effective search space used: 10567220697
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)