BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZC04FM1.SCF screened BAC_end
(1040 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1264 1643 0.0
>3x_Contig1264
Length = 6524
Score = 1643 bits (829), Expect = 0.0
Identities = 889/903 (98%), Gaps = 5/903 (0%)
Strand = Plus / Minus
Query: 88 tcaagattcaacttcagaactggtacttttcttctttataaagacgaggaaatggaagat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 tcaagattcaacttcagaactggtacttttcttctttataaagacgaggaaatggaagat 917
Query: 148 ggtgctcaattaaggcagtcaattgagttctacttggaatttgtaccagaaaatagcggg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 ggtgctcaattaaggcagtcaattgagttctacttggaatttgtaccagaaaatagcggg 857
Query: 208 gaagaccttcagttaccaattttaccaagagatacatacacttatcattccccttatgag 267
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 856 gaagaccttcagttaccaaatctaccaagagatacatacacttatcattccccttatgag 797
Query: 268 aatgcagaggatgaacaaacagctgtcgatgcagaccaagatagaactgaagaccatatt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 aatgcagaggatgaacaaacagctgtcgatgcagaccaagatagaactgaagaccatatt 737
Query: 328 caagccatcgaaaccctgatagtagatgatgagcctgccgaggatgaaaggaataatttg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 caagccatcgaaaccctgatagtagatgatgagcctgccgaggatgaaaggaataatttg 677
Query: 388 aagaggcatctttcaaatagtattccatctccaccaacaaagacacccaagttgaatgca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aagaggcatctttcaaatagtattccatctccaccaacaaagacacccaagttgaatgca 617
Query: 448 tcacaatctgatgaagatgatcttatcctgctcgattaattgagcatcgctagtcttcca 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tcacaatctgatgaagatgatcttatcctgctcgattaattgagcatcgctagtcttcca 557
Query: 508 tatctatagatatctgttttacagtgatggatatatatatatatataaacgcacattaaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tatctatagatatctgttttacagtgatggatatatatatatatataaacgcacattaaa 497
Query: 568 gaactgtaattataatagtacaacattttttggagttttattacgtagtaacatatggca 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gaactgtaattataatagtacaacattttttggagttttattacgtagtaacatatggca 437
Query: 628 aatatgatgaggaaagtacaaacaatgattacaactgccagaaaaccaaaactgaaaaat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aatatgatgaggaaagtacaaacaatgattacaactgccagaaaaccaaaactgaaaaat 377
Query: 688 aaagaagaattcaaccattatcatagatgagaaaacagttatatgcccatttgccaaagt 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aaagaagaattcaaccattatcatagatgagaaaacagttatatgcccatttgccaaagt 317
Query: 748 tgaaatattgtgtgacaaacattacggtatatcaggttattctcgaatagatgatcttga 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tgaaatattgtgtgacaaacattacggtatatcaggttattctcgaatagatgatcttga 257
Query: 808 atgactntttagtctttgcaaccaagattctcgtttttgggatcttggttgacgttnctc 867
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 256 atgactttttagtctttgcaaccaagattctcgttttttggatcttggttgacgttcctc 197
Query: 868 ttggccatctttcgagtcgctgtctgtctttga-gttgggaaatcatctttactcatgcc 926
||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 196 ttggccatcttcgaagtcgctgtctgtctttgaggttgggaaatcatctttacttatgcc 137
Query: 927 cactattgaagggcagttgt-acatttttgcacta-ttgtgctgcccgtc-tgcgcagca 983
|||||||||| ||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct: 136 cactattgaa-ggcagttgtaacatttttgcactatttgtgctgcccgtcttgcgcagca 78
Query: 984 tag 986
|||
Sbjct: 77 tag 75
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,769
Number of Sequences: 1807
Number of extensions: 12769
Number of successful extensions: 1408
Number of sequences better than 1.0e-20: 1
length of query: 1040
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1024
effective length of database: 10,329,639
effective search space: 10577550336
effective search space used: 10577550336
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)