BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZC04RM1.SCF screened BAC_end
(1055 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1507 1796 0.0
>3x_Contig1507
Length = 11359
Score = 1796 bits (906), Expect = 0.0
Identities = 973/993 (97%), Gaps = 4/993 (0%)
Strand = Plus / Plus
Query: 53 cttccaaatccagttttcggttatctatgttatgaaagtttgataaatttaattcgtgag 112
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 10023 cttccaaatccagttttcggttatcaatgttatgaaagtttgataaatttaattcgtgag 10082
Query: 113 aataacctgttgattgagcttccattaaacaatagtttaaagcaaccagatctttttacc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10083 aataacctgttgattgagcttccattaaacaatagtttaaagcaaccagatctttttacc 10142
Query: 173 aacattttggtaaagttaagcgacatattgaaaactctgcctattcaacatttagtggtt 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10143 aacattttggtaaagttaagcgacatattgaaaactctgcctattcaacatttagtggtt 10202
Query: 233 ttgaaacttttatgcaaccatttagaactgatcatgaggtatcaagaggataatctgatg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10203 ttgaaacttttatgcaaccatttagaactgatcatgaggtatcaagaggataatctgatg 10262
Query: 293 aatttgcataatttggctcttgtctttgctcctgggctaatcaaggattattctggtgaa 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10263 aatttgcataatttggctcttgtctttgctcctgggctaatcaaggattattctggtgaa 10322
Query: 353 aaagatattgtggatatgaaggaaaggaattatttgatcggacttgtattacaaaattat 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10323 aaagatattgtggatatgaaggaaaggaattatttgatcggacttgtattacaaaattat 10382
Query: 413 agagagatttttaaagttcttcaacaaaagatagatgcataaatacattgatgcggcaaa 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10383 agagagatttttaaagttcttcaacaaaagatagatgcataaatacattgatgcggcaaa 10442
Query: 473 aacttaatatattgcgagagaatcttgagcgtgtatatattgtgttaaatacttataaat 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10443 aacttaatatattgcgagagaatcttgagcgtgtatatattgtgttaaatacttataaat 10502
Query: 533 gtaatatgtggaaggtttaagagctaaagtgatcccatcattcaggtaatattggaatca 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10503 gtaatatgtggaaggtttaagagctaaagtgatcccatcattcaggtaatattggaatca 10562
Query: 593 agtatgacaaagaaatcgtcggaatgggataggtctctcataaagaaaaagcgcacagga 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10563 agtatgacaaagaaatcgtcggaatgggataggtctctcataaagaaaaagcgcacagga 10622
Query: 653 tgtattcagaaactagtgtttcttatataaatcattataatcattactggtatgtcgtta 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10623 tgtattcagaaactagtgtttcttatataaatcattataatcattactggtatgtcgtta 10682
Query: 713 ttcaacattggtctaatgcaatccataatatctacgttatgtagctntagtgaatatctt 772
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 10683 ttcaacattggtctaatgcaatccataatatctacgttatgtagctttagtgaatatctt 10742
Query: 773 tcaactcgggtgttgcatacatctncaaccgcctgttacctacccttagtaaatgctcta 832
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 10743 tcaactcgggtgttgcatacatctccaaccgcctgttacctacccttagtaaatgctcta 10802
Query: 833 tggtactgaaatctttccgtgaaaggcctttgaacttaccgaactctgtccttatgtatg 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10803 tggtactgaaatctttccgtgaaaggcctttgaacttaccgaactctgtccttatgtatg 10862
Query: 893 tgataaaaatgtggcctg-tttctattgggttcttatgtgcagtccttacgcattgncta 951
|||| ||||||||||||| |||||||||| ||||||||||||||||| |||||||| |||
Sbjct: 10863 tgat-aaaatgtggcctgttttctattggtttcttatgtgcagtcctaacgcattgccta 10921
Query: 952 tacaaaatgatnaactnncctttgtaatncactaagtctctttgccatcngtttattaga 1011
||| |||||| |||| | |||||||| |||||||||||||||||||| |||||||||
Sbjct: 10922 tac-aaatgaataacttccttttgtaatccactaagtctctttgccatcgttttattaga 10980
Query: 1012 tg-atatattcaagcagtntatctggaaaatct 1043
|| ||||||||||||||| ||||| ||||||||
Sbjct: 10981 tgaatatattcaagcagtgtatcttgaaaatct 11013
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7834
Number of Sequences: 1807
Number of extensions: 7834
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 1055
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1039
effective length of database: 10,329,639
effective search space: 10732494921
effective search space used: 10732494921
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)