BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC1ZC05FM1.SCF screened BAC_end (1031 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1245 1600 0.0 >3x_Contig1245 Length = 6017 Score = 1600 bits (807), Expect = 0.0 Identities = 870/886 (98%), Gaps = 4/886 (0%) Strand = Plus / Plus Query: 85 cttttgagcagtatgcaacggctatagacgtggtagtagcacaaatcggaatcttatttt 144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4463 cttttgagcagtatgcaacggctatagacgtggtagtagcacaaatcggaatcttatttt 4522 Query: 145 ttcatgcaagaagccaaacgaaaaagtgggacatatgcagtcgaatgaccaacaaaaaca 204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4523 ttcatgcaagaagccaaacgaaaaagtgggacatatgcagtcgaatgaccaacaaaaaca 4582 Query: 205 cggaaaccagaaagaggatcattcagaccatataaggcaaggtgagagacaatcgattac 264 |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 4583 cggaaaccagaaagaggaacaaacagaccatataaggcaaggtgagagacaatcgattac 4642 Query: 265 ataataagcgttcacgtgtgtagagaatttcaaaggtacaacagaaatgaccaatagtgc 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4643 ataataagcgttcacgtgtgtagagaatttcaaaggtacaacagaaatgaccaatagtgc 4702 Query: 325 tccaaacttgttctaaacgaaaagacgtttcaaacgatctgaccatagaaaagaagttca 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4703 tccaaacttgttctaaacgaaaagacgtttcaaacgatctgaccatagaaaagaagttca 4762 Query: 385 agtggcgactattctcccacaacttcaggtacctccggacagaagttggtaaaaaattgt 444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4763 agtggcgactattctcccacaacttcaggtacctccggacagaagttggtaaaaaattgt 4822 Query: 445 cagctatctgcaatgaacgatcatagtgagatttcgtagtagcacgcactagtatgtgtt 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4823 cagctatctgcaatgaacgatcatagtgagatttcgtagtagcacgcactagtatgtgtt 4882 Query: 505 cttcttttttttgctgttggtaccaacggaatatacactctttccgggtataccacttca 564 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4883 cttcttttttttgctgttggtaccaacggaatatacactctttccgggtataccacttca 4942 Query: 565 cggtttcgccctacggttcccttgacatttggatttaccctaactccggaagttgtgatg 624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4943 cggtttcgccctacggttcccttgacatttggatttaccctaactccggaagttgtgatg 5002 Query: 625 tgaattatgatagcgccttcggcttacatcctgtcatcatgctggtaatactagcaatgc 684 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5003 tgaattatgatagcgccttcggcttacatcctgtcatcatgctggtaatactagcaatgc 5062 Query: 685 ttccttcttttttttcttgaagagccattgatgaccccgtgcaacgcgtacattttttat 744 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5063 ttccttcttttttttcttgaagagccattgatgaccccgtgcaacgcgtacattttttat 5122 Query: 745 ggaaaa-taaaagatgg-aaatcggaaatgt-atcggtgcatgattaagcaatgataatg 801 |||||| |||||||||| ||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 5123 ggaaaattaaaagatggaaaatcgg-aatgtaatcggtgcatgattaagcaatgataatg 5181 Query: 802 agctacagcattgaacaaagaaagaggggtcangaagatggatttgcgtgtacgttacgg 861 |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct: 5182 agctacagcattgaacaaagaaagagggttcaagaagatggatttgcgtgtacgttacgg 5241 Query: 862 cttctgatattctttcaaagcccctgccagaagtaggaatgggttacatctagatagcga 921 |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| Sbjct: 5242 cttctgatattctttcaaagcccctgccagaagtaggaatggtttacatcaagatagcga 5301 Query: 922 ggtagctcggatttagggttcgaattttctgcgggtgacgtatatg 967 ||||||||| ||||||| | ||||||||||||| ||||||||||| Sbjct: 5302 ggtagctcgaatttaggttcggaattttctgcggttgacgtatatg 5347 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7746 Number of Sequences: 1807 Number of extensions: 7746 Number of successful extensions: 61 Number of sequences better than 1.0e-20: 1 length of query: 1031 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1015 effective length of database: 10,329,639 effective search space: 10484583585 effective search space used: 10484583585 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)