BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZC06FM1.SCF screened BAC_end
(1031 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1386 1015 0.0
>3x_Contig1386
Length = 5452
Score = 1015 bits (512), Expect = 0.0
Identities = 707/755 (93%), Gaps = 16/755 (2%)
Strand = Plus / Plus
Query: 85 ctactgtgttcttgtacttctcctttgccattttcttggtcaagttcatcttgagcattg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4520 ctactgtgttcttgtacttctcctttgccattttcttggtcaagttcatcttgagcattg 4579
Query: 145 ttaatgctatcacttccggtgctttcgggaccagttccaacagaaagactcaagtcggtg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4580 ttaatgctatcacttccggtgctttcgggaccagttccaacagaaagactcaagtcggtg 4639
Query: 205 tcccaaccatctcccaattttataagagtttatgatacaaaagagagggagggagaggga 264
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 4640 tcccaaccatctcccaagttta-aagagtttatgatacaaaagagagggagggagaggga 4698
Query: 265 gatgcgtaatcttctgctcccgctctcgctcccgcttccactattccttctttgaacaat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4699 gatgcgtaatcttctgctcccgctctcgctcccgcttccactattccttctttgaacaat 4758
Query: 325 agagagagacagagagagaggacacgatcaacactttgaaagaaagagaaaaacttctta 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4759 agagagagacagagagagaggacacgatcaacactttgaaagaaagagaaaaacttctta 4818
Query: 385 taccccccccctatttttttttcgttcttcctttattgtatacatataccataccctgct 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4819 taccccccccctatttttttttcgttcttcctttattgtatacatataccataccctgct 4878
Query: 445 acttcatctattatttcctctttctactaatactgctgctgctactttaccgctgctact 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4879 acttcatctattatttcctctttctactaatactgctgctgctactttaccgctgctact 4938
Query: 505 tactattattacaacaacaaagccgtntaattattattgggccattgnnctctccctctt 564
|||||||||||||||||||||||||| |||||| ||| |||||||| ||||||||| |
Sbjct: 4939 tactattattacaacaacaaagccgttaaattataatt-ggccattg-tctctccctc-t 4995
Query: 565 ttctctcgccctttctttttttttttttcaaattccacaacacaaactatattctattct 624
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4996 ttctctcgccc-ttccttttttttttttcaaattccacaacacaaactatattctattct 5054
Query: 625 actttacttggtacaggtttcccctttctttcctttcaagagattgagtgttcttcattt 684
|||| || ||||||| ||||||| ||| || ||| |||||| ||||||| |||||| ||
Sbjct: 5055 acttcac-tggtaca-gtttccc--ttcctttcttccaagag-ttgagtg-tcttca-tt 5107
Query: 685 taagtgacaggtttcttaaaaattaaaaattaaaatcttaccttttattcggacttttaa 744
|| ||||| ||||||||||| | |||||| |||||||||| |||| ||| ||||| ||
Sbjct: 5108 tagttgaca-gtttcttaaaa--ttaaaatttaaatcttacc-tttaatcgaactttaaa 5163
Query: 745 cgtaaaaaaagcttttaaaacctgaacttttagccatgctgacttcaaatcaaccctttg 804
||||||||| |||| ||||| ||||||| ||| ||||||||||| | ||| |||||
Sbjct: 5164 cgtaaaaaagcctttaaaaactggaactttaagcaatgctgacttcgatacaaacctttt 5223
Query: 805 gtcaaagaaaaggtcgnaattaaaatgaaaaaagt 839
||||||||||| |||| ||| ||||||||||||||
Sbjct: 5224 gtcaaagaaaaagtcgaaataaaaatgaaaaaagt 5258
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,301
Number of Sequences: 1807
Number of extensions: 26301
Number of successful extensions: 512
Number of sequences better than 1.0e-20: 1
length of query: 1031
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1015
effective length of database: 10,329,639
effective search space: 10484583585
effective search space used: 10484583585
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)