BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZC06RM1.SCF screened BAC_end
(1011 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig463 367 e-101
>3x_Contig463
Length = 2578
Score = 367 bits (185), Expect = e-101
Identities = 278/296 (93%), Gaps = 10/296 (3%)
Strand = Plus / Minus
Query: 640 tccagaac-ccatggaagaatgaggtaaaccctgcgaagaatat-attaccaaggatccg 697
|||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2578 tccagaacnccatgnaagaatgaggtaaaccctgcgaagaatatcattaccaaggatccg 2519
Query: 698 aatagcccatagtaagagagatatggctggaagggcgacctgtatgggaacatgggatca 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2518 aatagcccatagtaagagagatatggctggaagggcgacctgtatgggaacatgggatca 2459
Query: 758 ttcctttgacat-atatcgggtcgaattttcaaagcgtaaaagaatcgtaaaaatgacac 816
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2458 -tcccttgacataatatcgggtcgaattttcaaagcgtaaaagaatcgtaaaaatgacac 2400
Query: 817 atttcatttctgccccaattattacagattgtagcactttgagatgttagcgaggatttt 876
| |||||| |||||| ||||| ||||||| ||||||| |||||||||||||||||| |||
Sbjct: 2399 a-ttcattcctgcccaaatta-tacagatggtagcac-ttgagatgttagcgagga-ttt 2344
Query: 877 gaaatttgttt-aagaagattggtccactgccatattcgatatc-caccgaaaatt 930
|||| |||||| |||| ||||||||||||||||||| ||||||| |||||||||||
Sbjct: 2343 gaaaattgtttaaagaggattggtccactgccatatacgatatcacaccgaaaatt 2288
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7666
Number of Sequences: 1807
Number of extensions: 7666
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 1011
length of database: 10,358,551
effective HSP length: 16
effective length of query: 995
effective length of database: 10,329,639
effective search space: 10277990805
effective search space used: 10277990805
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)