BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZC07FM1.SCF screened BAC_end
(1010 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1340 474 e-133
3x_Contig1633 272 1e-72
>3x_Contig1340
Length = 7156
Score = 474 bits (239), Expect = e-133
Identities = 300/315 (95%), Gaps = 4/315 (1%)
Strand = Plus / Minus
Query: 318 aaacacgaataagtgatgtctacgttagaagaattgaataaccaaagtcagccagatgat 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4479 aaacacgaataagtgatgtctacgttagaagaattgaataaccaaagtcagccagatgat 4420
Query: 378 gatgatatcgaccaagaatttttcaatctatcagctttcgaactaactactcgtgcgaag 437
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 4419 gatgatatcgatcaagaatttttcaatctatcagcttccgaactaactactcgtgcgaag 4360
Query: 438 ttgctagataacgaaattatgattttcagatccgaaccacaacgtttgtctcatgaaaac 497
||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 4359 ttgctagataacgaaattaggatattcagatccgaactacaacgtttgtctcatgaaaac 4300
Query: 498 agtcagatgcttgagaaaattaaggattatcaagaaaagatcatg-attacaaacaatta 556
||||||||||| ||||| ||||||||| ||||||||||||||| | || |||||||||||
Sbjct: 4299 agtcagatgctagagaagattaaggataatcaagaaaagatcaagaataacaaacaatta 4240
Query: 557 cccgtattttagtggcgaatgttgttgaaattatggatatggattgaattacaggatttc 616
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 4239 -ccgta-tttagtggcgaatgttgttgaaattatggatatgga-tgaattacaggattcc 4183
Query: 617 aacgagattgacact 631
|||||||||||||||
Sbjct: 4182 aacgagattgacact 4168
>3x_Contig1633
Length = 12594
Score = 272 bits (137), Expect = 1e-72
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 86 tctgaatccttctctaagaaaaccacaacacaaatatgttcagatagttcaagctacagc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tctgaatccttctctaagaaaaccacaacacaaatatgttcagatagttcaagctacagc 837
Query: 146 ggttgtttatttgctttacttaaaggtgttcctgttgtaagtatcgagtttttgaaccaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 ggttgtttatttgctttacttaaaggtgttcctgttgtaagtatcgagtttttgaaccaa 897
Query: 206 atgggcaaattgttaca 222
|||||||||||||||||
Sbjct: 898 atgggcaaattgttaca 914
Score = 182 bits (92), Expect = 9e-46
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 231 ctatttagattttcagtcaatgtaccaaggccttttgaatcgccacaaattatttccatc 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 ctatttagattttcagtcaatgtaccaaggccttttgaatcgccacaaattatttccatc 983
Query: 291 ttatagatacgttcctaatgtgctatcaaaca 322
||||||||||||||||||||||||||||||||
Sbjct: 984 ttatagatacgttcctaatgtgctatcaaaca 1015
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,865
Number of Sequences: 1807
Number of extensions: 14865
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 2
length of query: 1010
length of database: 10,358,551
effective HSP length: 16
effective length of query: 994
effective length of database: 10,329,639
effective search space: 10267661166
effective search space used: 10267661166
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)