BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZC07RM1.SCF screened BAC_end
(1066 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1649 1128 0.0
>3x_Contig1649
Length = 14442
Score = 1128 bits (569), Expect = 0.0
Identities = 627/640 (97%), Gaps = 6/640 (0%)
Strand = Plus / Plus
Query: 48 ttttcctatttatgattgattctctaaaatctaaaacaacaaaataaagggaagccttgt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2044 ttttcctatttatgattgattctctaaaatctaaaacaacaaaataaagggaagccttgt 2103
Query: 108 aatcacaacaaaaccaaataagcgaagaataaaaatcctccttcaataatcgtttggcct 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2104 aatcacaacaaaaccaaataagcgaagaataaaaatcctccttcaataatcgtttggcct 2163
Query: 168 tattttgacaagatattaccatagtctatattagttcgaggtgaacctccttccacatga 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2164 tattttgacaagatattaccatagtctatattagttcgaggtgaacctccttccacatga 2223
Query: 228 tcaactagtactgtacatcagcacattagattagtgaaccatctcgcatgtccgaaccca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2224 tcaactagtactgtacatcagcacattagattagtgaaccatctcgcatgtccgaaccca 2283
Query: 288 tcaattcaacgggagaagataataatccattttggagaagatggatcccaggaactaatg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2284 tcaattcaacgggagaagataataatccattttggagaagatggatcccaggaactaatg 2343
Query: 348 cttcagaagaaaacagtcaagatactcctactaattcgtcttctgaacaccaggacgaag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2344 cttcagaagaaaacagtcaagatactcctactaattcgtcttctgaacaccaggacgaag 2403
Query: 408 gatggctgaaaaggtatataccagcttggttcttcaatcaagaaagtttagaaatcagcg 467
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2404 gatggctgaaaaggtatataccagcttggttctccaatcaagaaagtttagaaatcagcg 2463
Query: 468 acagtacatcataccatcagcttaccaaaaaacaaattaaaatattggaaaatgaagcag 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2464 acagtacatcataccatcagcttaccaaaaaacaaattaaaatattggaaaatgaagcag 2523
Query: 528 agcaaggaatacttaaaggacatgatacatgttgctggtttaatgaaacttcgaataata 587
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2524 agcaaggaatacttaaaggacatgatacatgttgctggtttaatgaaactttgaataata 2583
Query: 588 aattacttgaattttgatgggggttttatccgtttacaacactggcatcgccgacttgtc 647
||||||| | ||| |||| |||||||||||||||||||||||||||| || |||||||||
Sbjct: 2584 aattactcg-attctgat-ggggttttatccgtttacaacactggcagcg-cgacttgtc 2640
Query: 648 cttttgccattggctccaaatattcattattaccacagcg 687
| ||||||||| ||||||||| ||||||||||||||||
Sbjct: 2641 c-cttgccattg--tccaaatatccattattaccacagcg 2677
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9873
Number of Sequences: 1807
Number of extensions: 9873
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 1066
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1050
effective length of database: 10,329,639
effective search space: 10846120950
effective search space used: 10846120950
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)