BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZC08FM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1554 1405 0.0
>3x_Contig1554
Length = 8957
Score = 1405 bits (709), Expect = 0.0
Identities = 737/744 (99%), Gaps = 2/744 (0%)
Strand = Plus / Minus
Query: 85 atatgcacatcctcgtctcatctcatcactgcatatttcggcagaaataattaaagttct 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6321 atatgcacatcctcgtctcatctcatcactgcatatttcggcagaaataattaaagttct 6262
Query: 145 tgtacataaatgcaaagagtgaaaaaaaagttgcagcctcactatcagccatcttgatga 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6261 tgtacataaatgcaaagagtgaaaaaaaagttgcagcctcactatcagccatcttgatga 6202
Query: 205 gaagcaaatatataacggtttttagaagatccatcggtgtgaacttctgaggcaaacaca 264
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 6201 gaagcaaatatataacggagtaaagaagatccatcggtgtgaacttctgaggcaaacaca 6142
Query: 265 aaacatacccttcgatacgcaaggatgacggctcgaccagagttgaacactttacatagt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6141 aaacatacccttcgatacgcaaggatgacggctcgaccagagttgaacactttacatagt 6082
Query: 325 gctgccacagaaccgacaattatccattcgaataatgaaagcctgaatgctttagactac 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6081 gctgccacagaaccgacaattatccattcgaataatgaaagcctgaatgctttagactac 6022
Query: 385 acaggaaatgatgataaaagtgttgctctgagcaatgctatcagccgaacaaactcgaca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6021 acaggaaatgatgataaaagtgttgctctgagcaatgctatcagccgaacaaactcgaca 5962
Query: 445 ggaaataagataccaaagaaacggaagcccagacggatgttcactacgcctggtagattc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5961 ggaaataagataccaaagaaacggaagcccagacggatgttcactacgcctggtagattc 5902
Query: 505 caacagcaattggcaattccaacgagttatttggagagaaaaccaacaaccaaggcagaa 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5901 caacagcaattggcaattccaacgagttatttggagagaaaaccaacaaccaaggcagaa 5842
Query: 565 gccaaagggttttactattttgtatcctgcatgaaacagggaaaaataatgctgtttgat 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5841 gccaaagggttttactattttgtatcctgcatgaaacagggaaaaataatgctgtttgat 5782
Query: 625 caaacattagataggatcgatcaatgctatgataccatgtggacatggcccggttttagt 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5781 caaacattagataggatcgatcaatgctatgataccatgtggacatggcccggttttagt 5722
Query: 685 catggtgtagaacttttatcagt-ccataaagatgcganagttttgggtacttttttaca 743
|||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 5721 catggtgtag-acttttatcagtcccataaagatgcgaaagttttgggtacttttttaca 5663
Query: 744 agtgttaagatgttgctttgataccaggtcgattgtatttcttccgttgttcccagtagg 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5662 agtgttaagatgttgctttgataccaggtcgattgtatttcttccgttgttcccagtagg 5603
Query: 804 aattgttttttataagagagagga 827
||||||||||||||||||||||||
Sbjct: 5602 aattgttttttataagagagagga 5579
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6969
Number of Sequences: 1807
Number of extensions: 6969
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)