BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZC08RM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1577 1524 0.0
>3x_Contig1577
Length = 10627
Score = 1524 bits (769), Expect = 0.0
Identities = 823/835 (98%), Gaps = 6/835 (0%)
Strand = Plus / Minus
Query: 45 ctttttgttttttcctttagcatgatttggttttccctcttctctctatcgaaaaaacca 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1299 ctttttgttttttcctttagcatgatttggttttccctcttctctctatcgaaaaaacca 1240
Query: 105 taatcaatattgacaaattgttcagcttaacagagtaggtcatctcgtcttattgactgt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1239 taatcaatattgacaaattgttcagcttaacagagtaggtcatctcgtcttattgactgt 1180
Query: 165 ttgaaagaagtacgcacaaaccacctaagtgaccattcataagcgctctcggaaatatgg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1179 ttgaaagaagtacgcacaaaccacctaagtgaccattcataagcgctctcggaaatatgg 1120
Query: 225 ctgaagtggaaaagcaagatgttgatatgctagcagctgaacaaaatgatcaagttgatc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 ctgaagtggaaaagcaagatgttgatatgctagcagctgaacaaaatgatcaagttgatc 1060
Query: 285 aagtggaggaagaagtggacagtgaaaagatcaaacttctcacagaagctacttccgaag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 aagtggaggaagaagtggacagtgaaaagatcaaacttctcacagaagctacttccgaag 1000
Query: 345 atggtactagtgcttctttcagaataacagatgaagatcatacccttggtaacacgcttc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 atggtactagtgcttctttcagaataacagatgaagatcatacccttggtaacacgcttc 940
Query: 405 gttatatgatcatgaaaaacccggaggtagaattctgtggttactctattcctcatcctt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 gttatatgatcatgaaaaacccggaggtagaattctgtggttactctattcctcatcctt 880
Query: 465 cagaaaactttttgcacattagaattcaaacatacggcaaaattactgctgtagaggctt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 cagaaaactttttgcacattagaattcaaacatacggcaaaattactgctgtagaggctt 820
Query: 525 tgcacaagggtcttggagatctaatggacatgtgtgatgctgtagaggacagattcacgc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 tgcacaagggtcttggagatctaatggacatgtgtgatgctgtagaggacagattcacgc 760
Query: 585 aaagaatcanggaaatgtagaaattggttatctccagctcccgcattaactatatataag 644
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 aaagaatcagggaaatgtagaaattggttatctccagctcccgcattaactatatataag 700
Query: 645 agaatagaattaaatacacaactacatcatccttgtataatacactataatatctattga 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 agaatagaattaaatacacaactacatcatccttgtataatacactataatatctattga 640
Query: 705 ttctaccgttatagctactggtaatctagcacattggaagcaccgttggatataccattg 764
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ttctacgtttatagctactggtaatctagcacattggaagcaccgttggatataccattg 580
Query: 765 gcaaaagtagctggagtggctaatgtaatcacgtgaccattttggtaaatt-gtacattg 823
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 579 gcaaaagtagctggagtggctaatgtaatcacgtgaccattttggtaaattggtacattg 520
Query: 824 g-acaaaattc-ttttctctcttttt--gttccttttgaaaaa-ttgcaagttcc 873
| ||||| ||| |||||||||||||| ||| |||||||||| |||||||||||
Sbjct: 519 gtacaaatttctttttctctcttttttgtttctttttgaaaaatttgcaagttcc 465
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8610
Number of Sequences: 1807
Number of extensions: 8610
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)