BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZC09RM1.SCF screened BAC_end
(1049 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig375 1481 0.0
>3x_Contig375
Length = 1974
Score = 1481 bits (747), Expect = 0.0
Identities = 916/953 (96%), Gaps = 15/953 (1%)
Strand = Plus / Plus
Query: 46 ttgcatatgcatgacaacgctgagcgtattcgccaagagttgatatagaaattggtagcg 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ttgcatatgcatgacaacgctgagcgtattcgccaagagttgatatagaaattggtagcg 806
Query: 106 gtttgtcgtcatgctccatgaattcaaccaaatttaataatgtctggtggatttcaggag 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gtttgtcgtcatgctccatgaattcaaccaaatttaataatgtctggtggatttcaggag 866
Query: 166 gattgtttggtgaggataaagcagagcacaaagactgaaccaaatcctcttgatattgcg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 gattgtttggtgaggataaagcagagcacaaagactgaaccaaatcctcttgatattgcg 926
Query: 226 tgtaaagttcaccccaacaacttgcaaatgaggcgttgaataattctctagctaatggat 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 tgtaaagttcaccccaacaacttgcaaatgaggcgttgaataattctctagctaatggat 986
Query: 286 agtagataccagccaatccggagcaggcacgtaaagcatgagaagatgattctttgagta 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 agtagataccagccaatccggagcaggcacgtaaagcatgagaagatgattctttgagta 1046
Query: 346 aagaaattgatagccgtctaatccactcttgccagtcctcctttgttctttgttgactac 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 aagaaattgatagccgtctaatccactcttgccagtcctcctttgttctttgttgactac 1106
Query: 406 aatcccaggcattttttagcacaagttggttgacaggaagcttcttggaagctaccttta 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 aatcccaggcattttttagcacaagttggttgacaggaagcttcttggaagctaccttta 1166
Query: 466 catcgtccatttctttattaggtaaatcgaaatctttatcaataataattttggtcggta 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 catcgtccatttctttattaggtaaatcgaaatctttatcaataataattttggtcggta 1226
Query: 526 gtggctcattattcaaaagtttggcaaccaaacggtcgtatattgtgtgctgaatgttct 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1227 gtggctcattattcaaaagtttggcaaccaaacggtcgtatattgtgtgctgaatgttct 1286
Query: 586 gtttgactaaagttttattgataactggaatgaatacagtaaaatcaatattgagttgta 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1287 gtttgactaaagttttattgataactggaatgaatacagtaaaatcaatattgagttgta 1346
Query: 646 aaagaagtaaacttaatgtgttcattgttgctttcacgtactcgagttctgatgtattta 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1347 aaagaagtaaacttaatgtgttcattgttgctttcacgtactcgagttctgatgtattta 1406
Query: 706 agactcttactatggncttgcacaantcctagacgacatttctaagtggattgacatttt 765
|||||||||||| || ||||||||| ||||||||||||||||| |||||||||||| |||
Sbjct: 1407 agactcttacta-gggcttgcacaa-tcctagacgacatttct-agtggattgaca-ttt 1462
Query: 766 ttcgatagacgtcctatagtaattgatttgcggccttctttcaaatttcctgaggctaaa 825
|||||||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||||
Sbjct: 1463 ttcgatagacgtcctatagtaa-tga-ttgcggccttc-ttcaaatttcctga-gctaaa 1518
Query: 826 ctccgatagttttatgattgtttgcaattaccaggtgagcatatttcctttagatgtggg 885
|||||||||||||||||| ||| || | ||| ||||||||||| ||||| |||||||||
Sbjct: 1519 ctccgatagttttatgatagttggc-agtacgaggtgagcata-ttcctctagatgtggt 1576
Query: 886 cc-caaacttacaatgacnttaatattctaaatgagaacacctttctta-tcgactggtc 943
|| ||||| ||||||| | |||||||||| |||| ||| | |||||| ||||||||||
Sbjct: 1577 ccaaaaactaccaatgacttcaatattctaattgag-acaaccttcttattcgactggtc 1635
Query: 944 ttttttcaaaac-ttcacaaac-aagattgtttttaaggtaaataaggattga 994
||||| |||||| | || |||| ||||| || | | |||||||||||||||||
Sbjct: 1636 tttttccaaaacatccaaaaacaaagatagtatattaggtaaataaggattga 1688
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7787
Number of Sequences: 1807
Number of extensions: 7787
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 1049
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1033
effective length of database: 10,329,639
effective search space: 10670517087
effective search space used: 10670517087
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)