BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZC10RM1.SCF screened BAC_end
(1023 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1683 977 0.0
>3x_Contig1683
Length = 16378
Score = 977 bits (493), Expect = 0.0
Identities = 601/629 (95%), Gaps = 6/629 (0%)
Strand = Plus / Minus
Query: 47 tgatatgggaatctcaccaaatttatcaatgtgtatctattctaattcagtgatgtactt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9480 tgatatgggaatctcaccaaatttatcaatgtgtatctattctaattcagtgatgtactt 9421
Query: 107 ttcagcatccaaagcagccatacaaccggaaccagcagatgtgattgcttgtctgtatct 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9420 ttcagcatccaaagcagccatacaaccggaaccagcagatgtgattgcttgtctgtatct 9361
Query: 167 ggcgtcttgaacatcaccagcagcaaagacacctgggacattggtcaaagtggaacctgt 226
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9360 ggcgtcttgaacatcaccagcagcaaagacacctgggacattggtcaaagtggaacctgg 9301
Query: 227 cacggtcttaacatagccggcttcgtcaagatcaacttgaccagcaacaatgttagtggc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9300 cacggtcttaacatagccggcttcgtcaagatcaacttgaccagcaacaatgttagtggc 9241
Query: 287 aggggtgtgaccaatggcgtagaacaacccgttgactggtagatcatattcttcgttggt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9240 aggggtgtgaccaatggcgtagaacaacccgttgactggtagatcatattcttcgttggt 9181
Query: 347 tttaacgttttttacctttaaagcgttcaagtatttaccatcacctttagcttccaaagt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9180 tttaacgttttttacctttaaagcgttcaagtatttaccatcacctttagcttccaaagt 9121
Query: 407 gacatggttgtatagaatttctatcttttcattctgttcagcacgntctttgcatgattt 466
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 9120 gacatggttgtatagaatttctatcttttcattctgttcagcacg-tctttgcatgattt 9062
Query: 467 gagaagcacgtagattgtcctttctgaccaacatgtaaaacttggaaccatattttggtc 526
||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 9061 gagaagcacgtagatggtcctttctgaccaacatgtaaaccttggaaccata-tttggtc 9003
Query: 527 aag-attgagcttttttacaagcagaatcccccaccccg-ttacagccaattgcttgttt 584
||| ||||||||| || ||||||||| || || | ||| | ||||||||| ||||||||
Sbjct: 9002 aagaattgagcttcttcacaagcagagtcaccaccaccgataacagccaatggcttgttt 8943
Query: 585 ctggagattgaaaaagc-cccttacaaacagcacaagcttgaatactttgttgccagtag 643
||| |||||| || ||| || | |||||||||||||||| ||||| ||||||||||||
Sbjct: 8942 ctgaagattggaacagcaccatcacaaacagcacaagctgaaataccttgttgccagtaa 8883
Query: 644 gttt-tttaccaggcaagtgcaaacgctt 671
|||| || |||||||||||||||||||||
Sbjct: 8882 gtttcttcaccaggcaagtgcaaacgctt 8854
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8288
Number of Sequences: 1807
Number of extensions: 8288
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 1023
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1007
effective length of database: 10,329,639
effective search space: 10401946473
effective search space used: 10401946473
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)