BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC1ZC11FM1.SCF screened BAC_end (999 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig390 1275 0.0 >3x_Contig390 Length = 1860 Score = 1275 bits (643), Expect = 0.0 Identities = 729/753 (96%), Gaps = 4/753 (0%) Strand = Plus / Minus Query: 83 tacgggagcgaatttatcgaacactcgtacatgtaccatctcacgagaacagaccacaga 142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1657 tacgggagcgaatttatcgaacactcgtacatgtaccatctcacgagaacagaccacaga 1598 Query: 143 cacaatttttcgatttggaacctggtcttactcttagaatctgctggtattcatctttcc 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1597 cacaatttttcgatttggaacctggtcttactcttagaatctgctggtattcatctttcc 1538 Query: 203 caatctatcgaactattttttctggcattcgttcctcaattgacactatgtgcagtacta 262 |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct: 1537 caatctatcgaactatctaagctggcattcgttcctcaattgacactatgtgcagtacta 1478 Query: 263 ccttatctattgtggaaatcacagacgttcgaaaatttaatgaatgtcctattcgtacaa 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1477 ccttatctattgtggaaatcacagacgttcgaaaatttaatgaatgtcctattcgtacaa 1418 Query: 323 acatacgcattcgttactttcaataaagtatgcacttctcaatatttcatttggtatttg 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1417 acatacgcattcgttactttcaataaagtatgcacttctcaatatttcatttggtatttg 1358 Query: 383 gtattatccccattttatttcgcaaatacaaccattacatggagaaaaggtgtggtctgt 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1357 gtattatccccattttatttcgcaaatacaaccattacatggagaaaaggtgtggtctgt 1298 Query: 443 atatttttatggatattgtctcaagccgtatggctttcacaagcatatctacttgaattc 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1297 atatttttatggatattgtctcaagccgtatggctttcacaagcatatctacttgaattc 1238 Query: 503 aaaggccaaaatgtatttttccccaacttattctttggcaatatagtgtttttcctcatc 562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1237 aaaggccaaaatgtatttttccccaacttattctttggcaatatagtgtttttcctcatc 1178 Query: 563 aacgtctatctactcggtgtctttatcactgacatcaaatccagaacgtcattcntcaga 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1177 aacgtctatctactcggtgtctttatcactgacatcaaatccagaacgtcattcc-aaga 1119 Query: 623 c-atcancataagaagaatatatatttttaacttagcatatactggagcgtactgtgaca 681 | |||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 1118 caatcaacataagaagaatatataattttaacttagcatatactgtagcgtactgtgaca 1059 Query: 682 ttttcaaagccacgatcgaagttctgacgagtattttgatgtttcattccgttcattc-a 740 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||| | | Sbjct: 1058 ttttcaaagccacgatcgaagtcctgacgagtattttgatgttccattccgttcatccaa 999 Query: 741 tttcatatccgctgtcagattcactcgctgcttgtttcttcatactgattattggaata- 799 ||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||| Sbjct: 998 tttcatatccgttgtcagattcactcgctgctgttttcttcatactgattattgaaatag 939 Query: 800 aattttgaaaaaaaaaagttttcaggttttgaa 832 ||||| |||||||||||| |||| |||||||| Sbjct: 938 aatttgaaaaaaaaaaagtattcaagttttgaa 906 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8941 Number of Sequences: 1807 Number of extensions: 8941 Number of successful extensions: 81 Number of sequences better than 1.0e-20: 1 length of query: 999 length of database: 10,358,551 effective HSP length: 16 effective length of query: 983 effective length of database: 10,329,639 effective search space: 10154035137 effective search space used: 10154035137 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)