BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZC11FM1.SCF screened BAC_end
(999 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig390 1275 0.0
>3x_Contig390
Length = 1860
Score = 1275 bits (643), Expect = 0.0
Identities = 729/753 (96%), Gaps = 4/753 (0%)
Strand = Plus / Minus
Query: 83 tacgggagcgaatttatcgaacactcgtacatgtaccatctcacgagaacagaccacaga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1657 tacgggagcgaatttatcgaacactcgtacatgtaccatctcacgagaacagaccacaga 1598
Query: 143 cacaatttttcgatttggaacctggtcttactcttagaatctgctggtattcatctttcc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1597 cacaatttttcgatttggaacctggtcttactcttagaatctgctggtattcatctttcc 1538
Query: 203 caatctatcgaactattttttctggcattcgttcctcaattgacactatgtgcagtacta 262
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 1537 caatctatcgaactatctaagctggcattcgttcctcaattgacactatgtgcagtacta 1478
Query: 263 ccttatctattgtggaaatcacagacgttcgaaaatttaatgaatgtcctattcgtacaa 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1477 ccttatctattgtggaaatcacagacgttcgaaaatttaatgaatgtcctattcgtacaa 1418
Query: 323 acatacgcattcgttactttcaataaagtatgcacttctcaatatttcatttggtatttg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1417 acatacgcattcgttactttcaataaagtatgcacttctcaatatttcatttggtatttg 1358
Query: 383 gtattatccccattttatttcgcaaatacaaccattacatggagaaaaggtgtggtctgt 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1357 gtattatccccattttatttcgcaaatacaaccattacatggagaaaaggtgtggtctgt 1298
Query: 443 atatttttatggatattgtctcaagccgtatggctttcacaagcatatctacttgaattc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1297 atatttttatggatattgtctcaagccgtatggctttcacaagcatatctacttgaattc 1238
Query: 503 aaaggccaaaatgtatttttccccaacttattctttggcaatatagtgtttttcctcatc 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1237 aaaggccaaaatgtatttttccccaacttattctttggcaatatagtgtttttcctcatc 1178
Query: 563 aacgtctatctactcggtgtctttatcactgacatcaaatccagaacgtcattcntcaga 622
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1177 aacgtctatctactcggtgtctttatcactgacatcaaatccagaacgtcattcc-aaga 1119
Query: 623 c-atcancataagaagaatatatatttttaacttagcatatactggagcgtactgtgaca 681
| |||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 1118 caatcaacataagaagaatatataattttaacttagcatatactgtagcgtactgtgaca 1059
Query: 682 ttttcaaagccacgatcgaagttctgacgagtattttgatgtttcattccgttcattc-a 740
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||| | |
Sbjct: 1058 ttttcaaagccacgatcgaagtcctgacgagtattttgatgttccattccgttcatccaa 999
Query: 741 tttcatatccgctgtcagattcactcgctgcttgtttcttcatactgattattggaata- 799
||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 998 tttcatatccgttgtcagattcactcgctgctgttttcttcatactgattattgaaatag 939
Query: 800 aattttgaaaaaaaaaagttttcaggttttgaa 832
||||| |||||||||||| |||| ||||||||
Sbjct: 938 aatttgaaaaaaaaaaagtattcaagttttgaa 906
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8941
Number of Sequences: 1807
Number of extensions: 8941
Number of successful extensions: 81
Number of sequences better than 1.0e-20: 1
length of query: 999
length of database: 10,358,551
effective HSP length: 16
effective length of query: 983
effective length of database: 10,329,639
effective search space: 10154035137
effective search space used: 10154035137
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)