BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZC11RM1.SCF screened BAC_end
(989 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig343 1292 0.0
>3x_Contig343
Length = 1398
Score = 1292 bits (652), Expect = 0.0
Identities = 667/672 (99%)
Strand = Plus / Plus
Query: 46 cttgatatcttcacgaaggggatgactttacgattcaaatctccagatgcagatgtaatc 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 cttgatatcttcacgaaggggatgactttacgattcaaatctccagatgcagatgtaatc 786
Query: 106 cgtagttgggtacagtccatcaacgagttattaccacacttgaacaattatggctctgaa 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 cgtagttgggtacagtccatcaacgagttattaccacacttgaacaattatggctctgaa 846
Query: 166 tctgaccttgagattgcagaatccgatgacgaacaaattgaaggggaacaagctgatttt 225
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 tctgaccttgagattgcagaatccgatgacgaacaaattgaaggggaacaagctgatgaa 906
Query: 226 tatgggatacagaaaacaactcaagtcgttaaagaaaataaagataccaattccacttct 285
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 catgggatacagaaaacaactcaagtcgttaaagaaaataaagataccaattccacttct 966
Query: 286 gatataaaatctattaataacggagttgtcgaagaagacaagaagtttttcgagttttat 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 gatataaaatctattaataacggagttgtcgaagaagacaagaagtttttcgagttttat 1026
Query: 346 gacgccttaaaaccttcgcatctaattcaatccggtgtaatacatgccaagaataaaaga 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 gacgccttaaaaccttcgcatctaattcaatccggtgtaatacatgccaagaataaaaga 1086
Query: 406 tctctaactggaaggaaatggaaatcctataaatgtgaacttacaaataggtctttaaaa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1087 tctctaactggaaggaaatggaaatcctataaatgtgaacttacaaataggtctttaaaa 1146
Query: 466 ctttattcgatcaagactggtgactgtaggtattctgttccaatggagaatgtagttgac 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1147 ctttattcgatcaagactggtgactgtaggtattctgttccaatggagaatgtagttgac 1206
Query: 526 tgtattgaagtggacagtaaagatcctttattcgcagtaatcactttcaaccaaaggcta 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1207 tgtattgaagtggacagtaaagatcctttattcgcagtaatcactttcaaccaaaggcta 1266
Query: 586 aaactaaaagctaatgatgaagatgaattagtagattggatcataaatacaaagagttgc 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1267 aaactaaaagctaatgatgaagatgaattagtagattggatcataaatacaaagagttgc 1326
Query: 646 gtaatggttagaaactcattagcagcacacacaataagaagttgagatagataggcgatg 705
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1327 gtaatggttagaaactcattagcagcacacacaaaaagaagttgagatagataggcgatg 1386
Query: 706 gtcctcacattt 717
||||||||||||
Sbjct: 1387 gtcctcacattt 1398
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8452
Number of Sequences: 1807
Number of extensions: 8452
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 989
length of database: 10,358,551
effective HSP length: 16
effective length of query: 973
effective length of database: 10,329,639
effective search space: 10050738747
effective search space used: 10050738747
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)