BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZC12FM1.SCF screened BAC_end
(993 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig641 886 0.0
>3x_Contig641
Length = 2317
Score = 886 bits (447), Expect = 0.0
Identities = 488/499 (97%), Gaps = 2/499 (0%)
Strand = Plus / Minus
Query: 94 ctggttcaattcatttcttttggtcttgttactggggcttttaccagcctgctagctgtt 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1671 ctggttcaattcatttcttttggtcttgttactggggcttttaccagcctgctagctgtt 1612
Query: 154 tttctgtaggcaaaactgtaaggggcacgtgaaatacgaaatcgtatccctccatgtctc 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1611 tttctgtaggcaaaactgtaaggggcacgtgaaatacgaaatcgtatccctccatgtctc 1552
Query: 214 ttttggcatggtataggttttcttttcggtcctcataggttttactcaatgatatttcag 273
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 1551 ttttggcatggtatagggtaccttttcggtcctcataggttttactcaatgatatttcag 1492
Query: 274 tgttttgctcagctaatggaatcatgacaaatttaaatgttagcatccatttaagttgaa 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1491 tgttttgctcagctaatggaatcatgacaaatttaaatgttagcatccatttaagttgaa 1432
Query: 334 atatgtttgttttaaattgactagtaatgtaagtcgtgggagagcattgaggaataagtt 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1431 atatgtttgttttaaattgactagtaatgtaagtcgtgggagagcattgaggaataagtt 1372
Query: 394 tcatgcaaatcttatcgcaattatcgaaatttgtagcgtgagtttcgtagactaaagttc 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1371 tcatgcaaatcttatcgcaattatcgaaatttgtagcgtgagtttcgtagactaaagttc 1312
Query: 454 ccgaaggcttcttctttgagatattttcatctgacgagaattttggattaatcaactcaa 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1311 ccgaaggcttcttctttgagatattttcatctgacgagaattttggattaatcaactcaa 1252
Query: 514 atgttccgatggatgctggcaccagcagtcacttttaaaattgaattattcttctacttt 573
||||| |||||||||||| || ||||||||||||| ||| | |||||| |||||||| ||
Sbjct: 1251 atgtttcgatggatgctgtca-cagcagtcactttaaaattggaatta-tcttctacatt 1194
Query: 574 tttcaagtcaagtattata 592
|||||||||||||||||||
Sbjct: 1193 tttcaagtcaagtattata 1175
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,364
Number of Sequences: 1807
Number of extensions: 29364
Number of successful extensions: 3275
Number of sequences better than 1.0e-20: 1
length of query: 993
length of database: 10,358,551
effective HSP length: 16
effective length of query: 977
effective length of database: 10,329,639
effective search space: 10092057303
effective search space used: 10092057303
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)