BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZC12RM1.SCF screened BAC_end
(993 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1186 1219 0.0
>3x_Contig1186
Length = 4633
Score = 1219 bits (615), Expect = 0.0
Identities = 734/767 (95%), Gaps = 5/767 (0%)
Strand = Plus / Plus
Query: 45 cttctcaatgctagaggaaccactctagtttttagcattgcttaaagaaggttttcgact 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2345 cttctcaatgctagaggaaccactctagtttttagcattgcttaaagaaggttttcgact 2404
Query: 105 gagttcgttaacctttcagtggaacagagacgaagtgtaaccaagaaagaatatacacag 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2405 gagttcgttaacctttcagtggaacagagacgaagtgtaaccaagaaagaatatacacag 2464
Query: 165 tggaaacagatataaaaacccacttataacttatatatatggggaaagtagaacaaaatt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2465 tggaaacagatataaaaacccacttataacttatatatatggggaaagtagaacaaaagc 2524
Query: 225 ttttgagagaagtgcttcatagaaggatggaacggtggatcaaaggtttgaatggtgtag 284
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2525 agatgagagaagtgcttcatagaaggatggaacggtggatcaaaggtttgaatggtgtag 2584
Query: 285 ctgagtcatattgagagtgaaaaaaaaaaattctttttccaattcaggtcatcgcgaacg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2585 ctgagtcatattgagagtgaaaaaaaaaaattctttttccaattcaggtcatcgcgaacg 2644
Query: 345 agcgaaacagggccgaaacggtataaactggattgataaactggacacctttgtccagat 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2645 agcgaaacagggccgaaacggtataaactggattgataaactggacacctttgtccagat 2704
Query: 405 gcttactcgtgatgtggaccaacggaggttaattgatattctcttaattctcctggctac 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2705 gcttactcgtgatgtggaccaacggaggttaattgatattctcttaattctcctggctac 2764
Query: 465 ggatggggtgtcagttctatgggggaagaagatatataaatattgtttttaaggctatat 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2765 ggatggggtgtcagttctatgggggaagaagatatataaatattgtttttaaggctatat 2824
Query: 525 atcttatggatatataatgtagcagtaaatcggatagggaaaggctagctttcttctt-c 583
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2825 atcttatggatatataatgtagcagtaaatcggatagggaaaggctagctttcttcttcc 2884
Query: 584 tagttgaatgatgatttaaattcggagtccaatctcttgtgaacagccttcatgaactct 643
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 2885 tagttgaatgatgatttaaattcggagtccaatctcttgtgaacagcttcaatgaactct 2944
Query: 644 tcggtagtgacgtatgaagatcttgtc-gtcttaccccagatcaatgccaaatctttagt 702
||||||||||||||||| |||| |||| ||||||||| ||||||||||||||||||||||
Sbjct: 2945 tcggtagtgacgtatgaggatc-tgtcggtcttacccaagatcaatgccaaatctttagt 3003
Query: 703 cataattcaatctt-ttgaaaccggttgacgggagcagaatccaccaatttggcgaaatt 761
||||||| ||||| ||||| | |||||||| |||||| |||||||||| |||| ||||
Sbjct: 3004 cataatttcatcttcttgaaccgtgttgacggtagcagattccaccaattcggcg-aatt 3062
Query: 762 taaccaatttgggggggctattcaacttaaccccttggataaagcct 808
| |||| | |||| ||||| ||||||| ||| |||||| ||||||
Sbjct: 3063 tcaccacatctggggtgctatccaacttacccctttggatcaagcct 3109
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,052
Number of Sequences: 1807
Number of extensions: 13052
Number of successful extensions: 105
Number of sequences better than 1.0e-20: 1
length of query: 993
length of database: 10,358,551
effective HSP length: 16
effective length of query: 977
effective length of database: 10,329,639
effective search space: 10092057303
effective search space used: 10092057303
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)