BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZD01FM1.SCF screened BAC_end
(1046 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1726 529 e-150
>3x_Contig1726
Length = 20144
Score = 529 bits (267), Expect = e-150
Identities = 355/382 (92%), Gaps = 3/382 (0%)
Strand = Plus / Minus
Query: 282 gagcanaagagnaaagcnctaananaaactgctcctgatcgttagggtcgcccttggcgt 341
||||| ||||| |||| |||| | |||||||||||||||||||||||||||||||||||
Sbjct: 3337 gagcataagagataagctctaatataaactgctcctgatcgttagggtcgcccttggcgt 3278
Query: 342 tgtgggaacgaatcatttcaataaggttcaacaacaatagcttgaagttcaaatcttcat 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3277 tgtgggaacgaatcatttcaataaggttcaacaacaatagcttgaagttcaaatcttcat 3218
Query: 402 ctgtaatatggtcattcaaactttcgagtacctctattccaaatacctcggtaatctttt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3217 ctgtaatatggtcattcaaactttcgagtacctctattccaaatacctcggtaatctttt 3158
Query: 462 ccatagctagtaaaatttcacccttcttgatacagtccttgatgtatgcccttttctt-a 520
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 3157 ccatagctagtaaaatttcacccttcttgataagttccttgatgtatgcccttttcttaa 3098
Query: 521 tcatatatacagagctgaatccttcaatggctttggtggaattcaaaaaccccagctcct 580
|||||||||||||| ||||| |||||||| ||||| |||||||||||||||| |||||||
Sbjct: 3097 tcatatatacagagttgaattcttcaatgtctttgttggaattcaaaaacccaagctcct 3038
Query: 581 tagccatggccgatactagaatcctcatatgccctcacccacaaatagctcaataataac 640
||||||| || ||||||||| |||||||||||| ||||| |||||| |||||||||||
Sbjct: 3037 tagccat-gcggatactagattcctcatatgccatcaccacaaaatagttcaataataac 2979
Query: 641 cctgggattcaccggctcatta 662
||| ||| ||||||||||||
Sbjct: 2978 attggtatt-accggctcatta 2958
Score = 208 bits (105), Expect = 2e-53
Identities = 127/133 (95%), Gaps = 1/133 (0%)
Strand = Plus / Minus
Query: 94 tctgttcactaccatcagctactttagttctcatatttaaggaatatagctgtttcaact 153
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3525 tctgttcactag-atcagctactttagttctcatatttaaggaatatagctgtttcaact 3467
Query: 154 tctttggtaacttagcagaaggactcgaacttttttcatccgataacgggaagagaagaa 213
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 3466 tctttggtaacttagcagaaggactcgaaccatcctcatccgataacgggaagagaagaa 3407
Query: 214 gggtcataactaa 226
|||||||||||||
Sbjct: 3406 gggtcataactaa 3394
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5328
Number of Sequences: 1807
Number of extensions: 5328
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 1046
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1030
effective length of database: 10,329,639
effective search space: 10639528170
effective search space used: 10639528170
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)