BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZD01RM1.SCF screened BAC_end
(1017 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1069 1023 0.0
>3x_Contig1069
Length = 3994
Score = 1023 bits (516), Expect = 0.0
Identities = 562/575 (97%), Gaps = 2/575 (0%)
Strand = Plus / Plus
Query: 38 aagcttttagaataagtactgcatctagtatcgctgtttatgtagtcctaatgtagggtc 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3422 aagcttttagaataagtactgcatctagtatcgctgtttatgtagtcctaatgtagggtc 3481
Query: 98 agaggtgtatatacgattctgtttactgtagtgtacctcacataaccaaaaaaaaaaaaa 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3482 agaggtgtatatacgattctgtttactgtagtgtacctcacataaccaaaaaaaaaaaaa 3541
Query: 158 aaaattcactgcggttcctgtaaatgagtgtgagtagaagcattaaccgtactgcaatgc 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3542 aaaattcactgcggttcctgtaaatgagtgtgagtagaagcattaaccgtactgcaatgc 3601
Query: 218 ttcatttgtcgaaatgggtagttggtgttgatggttgttgtccaaatttataataaaaga 277
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3602 ttcatctgtcgaaatgggtagttggtgttgatggttgttgtccaaatttataataccgga 3661
Query: 278 gaattagatagctttaaaagataaagaatttagttatcgagaggttctattttgtatagg 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3662 gaattagatagctttaaaagataaagaatttagttatcgagaggttctattttgtatagg 3721
Query: 338 gtaaatctatctctttcttgtactgttggcgaaacgtcctctaccaacacgaacattgtg 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3722 gtaaatctatctctttcttgtactgttggcgaaacgtcctctaccaacacgaacattgtg 3781
Query: 398 gtgctttaaaccatcgatggcaaacggcgagatataattttctgcagatccgccaccgat 457
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3782 gtgctttaaaccatcgatggcaaacggcgagatataaccccctgcagatccgccaccgat 3841
Query: 458 ccagttgtttaggatcttttcgttgtgtcttctagtccattcttcttgtttgacagcctt 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3842 ccagttgtttaggatcttttcgttgtgtcttctagtccattcttcttgtttgacagcctt 3901
Query: 518 ctcgtactccttttgatcttctcttangagttcaacatcttgagaatgttttgattgtac 577
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 3902 ctcgtactccttttgatcttctcttaggagttcaacatcttgagaatgttttgaatgtac 3961
Query: 578 aaaaccttttgttgcccaattctcttctgtgcatt 612
|||||| ||||||| |||| |||||||||||||||
Sbjct: 3962 aaaacc-tttgttg-ccaaatctcttctgtgcatt 3994
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,960
Number of Sequences: 1807
Number of extensions: 18960
Number of successful extensions: 2881
Number of sequences better than 1.0e-20: 1
length of query: 1017
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1001
effective length of database: 10,329,639
effective search space: 10339968639
effective search space used: 10339968639
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)