BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC1ZD02FM1.SCF screened BAC_end
(1034 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1613 882 0.0
>3x_Contig1613
Length = 13977
Score = 882 bits (445), Expect = 0.0
Identities = 510/528 (96%), Gaps = 3/528 (0%)
Strand = Plus / Minus
Query: 86 tcatctatttgtttatttgtttctattacaataaagccataaagttttgttcagattttt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13889 tcatctatttgtttatttgtttctattacaataaagccataaagttttgttcagattttt 13830
Query: 146 tttcatagaagggaacttatggggaacttattgcactgatactattaacgttaactcctt 205
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 13829 tttcatagaagggaacttatggggaacttatggcactgatactattaacgttaactcctt 13770
Query: 206 gatgaatgactatactttancttactttaaactaacataggaattaatttctcatgtaat 265
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 13769 gatgaatgactatactttatcttacaataaactaacataggaattaatttctcatgtaat 13710
Query: 266 ctcttaggtagtttcctagcttttgcgctccttgttcaacagcgttcttcaacaggtcaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13709 ctcttaggtagtttcctagcttttgcgctccttgttcaacagcgttcttcaacaggtcaa 13650
Query: 326 attcgtcatcagcaccagacgtgaactccatgaagtttcgtccgccaagagaaccgcttc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13649 attcgtcatcagcaccagacgtgaactccatgaagtttcgtccgccaagagaaccgcttc 13590
Query: 386 tgtttgttcttgttccattttgtggattcaatggtcttccaaattcgtcgaactgatctt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13589 tgtttgttcttgttccattttgtggattcaatggtcttccaaattcgtcgaactgatctt 13530
Query: 446 cgctctggccttcgccaaagtatgaggctgaagaaatagatgtggcattactgaaagtct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 13529 cgctctggccttcgccaaagtatgaggctgaagaaatagatgtggcattactgaagttct 13470
Query: 506 gtctgagtttttcttgagcttctttacttgccttgtcatcgtaacttccaccagaaaacc 565
||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||
Sbjct: 13469 gtctgagtttttcttgagcttctttacttgcctcgtcatcgtagcttccacgagaaaaca 13410
Query: 566 ctgggtttgaagaaaataccctttttgttctcccgattttttgggcaa 613
| ||| ||||| | |||||| ||||||||| |||| |||||||||||
Sbjct: 13409 cctggtctgaag-agataccc-ttttgttct-ccgaatttttgggcaa 13365
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7921
Number of Sequences: 1807
Number of extensions: 7921
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 1034
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1018
effective length of database: 10,329,639
effective search space: 10515572502
effective search space used: 10515572502
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)